RNA id: AMCG00008217


Basic Information

Item Value
RNA id AMCG00008217
length 1113
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00008217
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45640286 ~ 45641803 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTCTCTAAACCAGAACGGCATTTCCTAGATGAACTGAGCTGCCCGATCTGTCTGCAGCTCTTCTCTGAGCCGGTCCTGCTGCCCTGTGGTCATAACTTCTGTGTCTCCTGTATCGAGGGAGTGATTGAGCAAGAGAGTGGGAGAGGACGGCACGCCTGCCCCGAGTGCCAGAGTGAGTACAGGGGGAGAGCAGCGCTGCAGAGGAGCTTCAAGCTCTGTAACATTGTGGAGGGATACAAAGCCAGCCAGGGCTCCGGCGACTCTGAGGTACTCTGCATTATGTGTCTAGAGAATCCTCTCCCGGCAGTAAAGACATGCCTGAAGTGTGAGACCTCAATGTGTTCCCTGCATCTTCATCTGCACACAAAGAAATTGTCTTTCCAGAACCACACTCTGGTAGGGGCCATTCTACTCTCCTGCCCCAGCCGGGCCCAGATGATGAACCAGCCACAGAGTCAAGTACCAGACCCTGCTGAACTGCAATCCAGACTGGACTCCCAGATGAAGGAAATCGCAGCCAACCTGAAGACTATCGAGTTGCTCTTGCAGAATGGAGAGAAGACAAAAGCCGCAGTGAAAGCCACCAACTCTGAACTCAAACAGAAGGCCGTGGGGCTGTTGGACCACATGGTGGAGCTGGTGAAGAGCTACAGATCCCAGGTGATTGAACTGATTGACACAGAGCAGAGCCTGAGTGAGGAGAGCCTGCAGGGGAGCATGCACCAAGTGGCTGAGCAGCAGGAGCTTCTGAAGGCCACACAGCTCCAGGCCCAATCAGTCCTGGCTGAGCAGGACGAGAGTGTGTTGGCTCAGAAGCTCGCAGCCATCGAAACTCCAATAACCGAAGTCCTGAAGCAACCTCTGAAAGAACCATGTGTAGCACATTCAAACCCAAAGAGTGGTAAAGGCACTTCCCTGAAGAAAGCCACTCATCTTACAAAGGTTGAGGTGGCACTGAACTATGAGACTGGGACAGTGTCCTTTCACAGCATTAGAGATCAAAGGGTTCACCTGCACACTTTTAACACAACCTTTACAGAACCGGTGCATCTTGGCTTTCGCATTGTGTCCTGTAGGCCAAAAGCTCAGATAACTGTGCATTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36551 lncRNA downstream 149396 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 177756 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 219824 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 286200 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 488959 45149501 ~ 45151327 (-) False AMCG00008192
TU36651 lncRNA upstream 27098 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 44435 45686238 ~ 45714037 (-) False G29249
TU36696 lncRNA upstream 151875 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 337457 45979260 ~ 45979468 (-) True G29294
TU36772 lncRNA upstream 608860 46250663 ~ 46251181 (-) True G29348
AMCG00008207 mRNA downstream 93598 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008208 mRNA downstream 103231 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008206 mRNA downstream 121576 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008209 mRNA downstream 136724 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008203 mRNA downstream 156164 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008215 mRNA upstream 3445 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008213 mRNA upstream 75589 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008214 mRNA upstream 95685 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008216 mRNA upstream 135659 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008222 mRNA upstream 470133 46111936 ~ 46123767 (-) True AMCG00008222
TU36269 other downstream 1222090 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2875632 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3790396 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4438461 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4623038 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 408892 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 839143 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2072131 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2482122 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2639539 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile