RNA id: AMCG00008219


Basic Information

Item Value
RNA id AMCG00008219
length 8171
RNA type mRNA
GC content 0.49
exon number 24
gene id AMCG00008219
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46039948 ~ 46068818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCCATGTCGCCCTCCTCAGAACCCAGACTCGCTGGACTCCTCCATTCAGAGCGCCCTCACGGCCCTCTACCCACCATTTGAGGCCACGGCCCCCACCGTCCTCAGCCAGCTCTTCCGGGTCATCGAGGAGCGTTACCAGGGCGACGCATTGCAGTGCTTCCTGGACTTCCTGATCCCCACCAAGCGCATCCTGGAAAGTGTGCAGCAGGCTGCCTGTGTGAGTGTCACTCCAGCACGGTTAGAGTTAGGGTACCCAGGAGTCCCTAACCTCAACCCTACAGCGATGCCCATCGTAGTAAATATTGACCTTCTCTTGCAGGCTGTGTACTCTGACGTGCTCTTCCGCTTTGAGGGTTGGCCACtctgcctgagagagagggtggtgATCCAGCTGGCGTCCCTCAACCCCTTGCTTTTGCGCCCAGGAGATTTCTACCTGCAGGTGCAGCCCTTTGGGGAACAGGCAGCCCGTATCGTGCTCAAGAGCCTGCTGGAGGATCACCGGGAGGTGGAGGAGACCCCTGTCCCCGAGACCTCTTACCCCAGCATATTCACCAAAGACTGGCTGGAGGAGATCAACCAGGGACGCCATGGCACCCCGCTGCACACATGCCTGCTGTCCACGGATCAGGGCATCGTGAAGGTACCGTGGGCACAAGTGGCCAGTCCAGAGTTTGTGGACAAACCTAAAGCCATGGCCAGCTCTCTGGTAACCCCTGAGGTTCCCCCAACTGCGCCGCCCCCTTCCTCTAACCCATCTCCCTTCTCCGTGGAGACCAGGATTCTCCCCGCCAAGGACGGCATTGCAGTCTCCCTCAGGCTCGTCGATGGCACCTGCACCAGGCTTATCAAGGTGGACCAGCCCAAGGTGGCTGGCAAACCCATTGGCTGGGTGTCACCCAACACCTGGGACAGCCGCAACCGAGAGCTGGAAGGGGATTATGTGGACCTGGTGGAGTTCACCAAGGAGAGGGCTGCTCTGGCCCTCAGCAGGTTACCTCCACGGACTACAAAGGACCCCCCTTCCTTTGAGGCATCCAGGCCTCTGCCCCCAGCCAGCGGGGACCCCACGCCCTGTGGTCGGACTGCCCAGTTCTCCGAGGAGCCCTGCACCCCGTGTCTGAGGAGGAAGCTGGGGCATGAGTCCAAACTCCAGGAGCTACGGTGCAGGTATCGGGAGTCCTACATGGCAGCCCTCCAGAATCCCGTAAACTTTGAAAGAGGGGACATGGCACCCATTTCGGAGGAGTCGGCCCCTGCCAGGAGAGGGTCAGGCTCCGTCTATGACAGTACAGAATCTGGCCAGGCCTACCAAACAGAACCTCAGTGTCAGGTTGTCAGCAACGATTCTCCCGTTTCATGCAGGGAGTCAGGCAAGGTGAAAGGTAAGCCCTGTTGTACTGGGGAAGActctgtgaaacaaacaaacaagaatgaGGGGATACCttcttccccttccccttccccatCCCTTGTTTCAGAATCCCCTAGAAAATGTTCTTTGGGGCAAAGCACAGCAGACATTGTGAGCAGTGACGTTTGTACAGAAATGATTCCTACCATCCATGTTGTACACTGTAAGAAGACAACAGTATTCGGACTGGTATCCCCAAAGGTGGACAGATGgaaatccattaaaaaagATGTTAGCCAGGTATGCAGAGCTGAAACGGAGGCTCCCACCCAACAGACAAACGGCCCTGAGAAAGCATTGCCCTCTAATGCAGAGAGGACCGCAACCCAGCCAGCATCCCGCTCTTGTGGACCGGGGCCTGGCTCAGCACAGGAACCCGGCGGTCATCTTCTGCATTTGGGCATTGCATGTTTACCAGGCAGCAGAGACAGGGCCGGGAGGGCTGTGGTGGAGGTGTATGGAGACCATCACGGCTGGAAGTCCCCTCTGCTCTCCAGCCAGGAGCTCTGCAAGCTGCTGTTGCACTTCTACTGCATTCCCAGGAAAGATGTCCGGGATCTTGGAATGACCTTAGTCACAGATGCCAGAAGGAAAGCCCCTCCCCCAGCTCTGTTTAAAGCCTTGTTGATGGTGCAGGAGCAGGCCCTCCATGCCGTTCATGGTGTCCTGATACTGGTGGACAAGGAGACCAGCCCTCGCACAGAGAGACACCCAGGACTGCAGGTGGAAGTGATGACGTCGTTGAAGGCGCTGCATAAGGTTGTGGAAGGAAACCAGCTAACGGCCAGTTTGGAGGGCACATTTCCTTACAGCCACAGTGACTGGATGCAGCTGTACCAGAAGCTGGACCCTTTTGTGCTGGATCTACGAGAAGCATCCAGTTTACTCCAGAAGGCCATCCGGCAGTTTGAAGGTAGCAAGAAGATCAACACCATTCAGGAAGTCCAGCAGTGCATTCAGGACCAGAAGACCATGATGAAGGAGGTGCTGGAGGACACTCGATTGGTGGCTTTGCAGCGGCAGGGCGGGGCCATCCTAGCCAGACTGAGGAAGGAAGAACCCCGGTTCACTCACTCTGAGGACTACCGataCGCCATGGAGTGTGTCACCAGCCTGTACAACCAGGTGGAAGACCGGGTTCACATGCTGGTCATGAGGTCTAACCAGTGCCTGCAGCATCTCGACTTCCTGCTCAAGCTCAGGGAACTGGAGGGCAGGTTTAAGAAGATCAGGGAGTGGTTCGATGCGGAAGGGGAGAGGCGACTGCTGGAAGCCGATTCAGTGGAGGACTCTCTGGAGAGGGTGGAGCAGACGCTGCAGAGCTTTAAGTCCTTCCTCAACCAGGCATCTGAGCAGAAACTCCAGGCCATGACTCTAGTGAAGGAGGCCGAGAAGATCCAGGGGTCGTCCTACCCTGAGATGGAGGTTTTCCGCACCATGGCCACGGAGCTTGCTAAAGACTGCAGACAGTATCTGGAGCAGGCCAGACCCAGTAGCAATTCAGTTAAGGATGACTTGAGTGAACTTGAGAAATACCACGATAAATTCACAGCCTTTTCTACAGAGCAGTTCCAGGAGGTCAAAGCTCAGGCCTGCACCCTCAAAGGCTCCAGGGGGATGCGGCTGTGGAACGTTGCCTGGCTCAAGGTCCAGGAAGTCAGGCAGCAGCTAGAGGAGAGGGTGCAGGACTTTGAGAAGGCCCAGGGTTCTGTGGGGGTGACACAAGATCTCAGGAGGCCAGGACCAGAGGAGACTCTGTTGGTAACATCTTCTGTTAGTATTGGCCCTGTGAGGGCACAACCCTCACGACAGGAACCAACAAGGACTAATCAAGTAGTGCTGGAAAGCAGGAACAGCCAACCCCAGGAAAATGATTATGCCActgttacatgttttaatttaaacttcaaACCTGACAACAAAAGCTGTAAGGGACTGAAAACTGTGTCGGCTCCCAAGAATGAACCCTGTGTCCTCCAATGCTCTGATAAAGAGGGAGTAATGGCAGTTCTGAAGGAGGGCAAAGAGCTTTCCAGGGAGGACAGCAAAGGAGCGGATTTCCCTCTGCACGCCCCTGGGAATGAGTGGTTTCCATGGCATCAGGCTCTGGGCAGGTCCCTAAGCGAAGGCTCGGCTGTGTGCGCTCCTCAGACTGAGCCACAGGCCTCACTGGCCTCTCGCGCTCACAGCCAGCCCTCGCGCAAGATCCTGCAGGCTGCCCGGGACTTCCAGATCTCTCGGCATGGCAGCTTCTGCTCTGATGACTCCTGCTGTCCATCTGCAGGCGACACCGGTGACCTGAGCAAAGCAACCTGCCCCACAGCCACCCACCACAGGCTTCCCATATGCCAAGGACCAGCCTCAATGACCAGCACACAACCCGGGGACAATGCTGGCAACTTTTTGAAGCTGCAGAGGATCATGGAGGAGCTGTTGCTGACGGAGCGGGAGTATGTCCGATCCCTGGGCTACATCATCGCTCACTACTTCCCACAGATGGAGCGGCCCGATGTTCCCCAGGACCTGAGGGGCCAGCGTGGCCGAATCTTTGGCAACCTGGAGAAGCTGCATGACTTCCACAGGCACTTCTTCCTCAAGGCGCTGGAGGGCAGCGTTAAAGAGCCCCTGCGTGTGGGCCGCTGCTTCCTCAGACACAAGGAGAGCTTTGGTCTCTATGCCCTCTACAGCAAGAACAAACCCCAGTCAGACTCTCTGCTCATTCACCATGGCCATGACTTCTTCAAGCAGAAACAGCTGGAGCTAGGAGACAAGATGGACCTGTCCTCTTACCTGCTGAAGCCAGTCCAGAGGATCAGCAAGTACAACCTCCTCCTGCAGGACATGGTGAAGGAGTGTGGGCCGCACCGGGGCCGAGAGAGGGCCGAGATCCAGGGCGCCCTTGAGGTCATTCGCTTCCAGCTGCGCCACGGCAATGACCTGCTCGCCATGGACGACATCCTCGACTGTGACGTGAACCTGAAGGAGCAGGGCCAACTGATTCGACAGGATGAATTCCTGGTCTCCTTCCGGAAGAAGAAGTGTTTCCGGCACATCTTCCTCTTCCAGGACCTCATCCTCTTCAGCAAAACCAAGAAGACAGAAGTGGGGAatgatgtgtatatttataaacagtCTTTtaagACCTCTGACATTGGAATGACTCACAACGCGGGCGACAGCGGACTGTGCTTCGAAATTTGGTTCCGCCGTCGAAATTCGCATGACACGTACATTCTTCAGGCAGAGAGCGGAGAGGTGAAGGAGGCCTGGACCAGAGACCTGGAGAGGATTCTATGGGAACAGGCAGTACGCAATAGAGAAATCCGGATGCAGGAGAGAGTGTTCATGGGAATCGGTAGCAAGCCCTTCATGGATATCAAACCCAGTGAGGCGGCCATTAGCGACAGGGCTGTCAACTGCGTCCCAACTGGAAGAGAATCCAGAGCATTATCGGGCGTTCCACTGCCCACCAACCACGAGCTACTCCTGTCACCAAGACCGAACTCCATTGGCTCAGGCAGCAGTCTGTCATCTTCTGGTAGCCatacctcctcctcatctgGAAGGGgatccctccctccccacagcTATCTCTCCAGCCCATCACAGAGAGGGGATGCCAAAGGGGGCATCTACTCCATGACAGGAGCTCTAGAGGAGGATGATCTGGACAATGACACAGAGAACCTTCATCTGCTATTGGACAGCTCTGAGTCCTCCAGCGAGAGTGTCAGTGGATTCAGCAGCTCAGACCAGAGTTGCCTGTCTGTGATTGGAGGAGAGACAGAAGACAGCTCCTCCGTCTCCTCCTTGTGCTCCAAGCCGAGCTCCGCCCACGAGCCTCCATCTGAATTCCGCAGACGCACCTCCCCTGTTATATCCAGAAAGAGGACTTCCCCAGCCCCCAAAACCCAGGCCGTGAGTGCAGGGCAGCACCCGCAAAAGGTGGGGTGTTACAGTGCAGTCATCCTAATCCGGGGAAAGTTTTTACTGGCCGATCCACAGAGGTCTGAGCAGCTGAGGCAGTATTGATATATTGATTGACAAGCGTCCCCCAATGGTGTAGAATCCTATATGGGTCCTGGCTGAAAGAAAGGGAGCACGTAGACAAGAAAAACAGTCCTTGCATTTCCCTGACACATGTGTACTTTAAAAAGGGAATACCTGAAAATGCACCTGATTTCCAAAACTGCACATCAACGACATGCCAGCGTAGAAACTTGGTCCAGAGAATCTGATGTCATTCATGATTTCTGATGGTAAATGCAATAAGAGATACTGGACCACCAATcctaacaaatacattaaaaaatactaattatcTCTATATCTTGCTCCtatttcatttcacaaatatTTTCTGTCCGTTAATCTAATCCTGTATAGGTTTTGGATCTGTACAGTCTACACTTCACTAAGCTATATGATGGTTTTACTACAAAAAGTGGTGGGAACAAATCTGTCCTGTGGAACATTAACCCTCTCTACAGATATAACAACATAAAGAGAGATTTTATGACTGAATATGACCTTTTTTGAATATCAGCAATAAGCAACAAATTGAAGATTTCGCAAGGAAACCCGTGATTTCTCTTGTTTACAATCTGTACTCAGTGATCTAAGGAATTtatgcttgtaataaaaaccttctAAATGAAATGCTTCATGACCAGTTACCAGTTTTCTATGATGATGGTAGTTGAATTATATGCTATTTGTTGTATCTATGCTTGATTCTTGCAGTATTATTATGAGGCAGTATGATATTtaatatcatatatttttttgtgttatttcagtgCTATTAAAATGTTAGTTCATAATAATGAATCTATATTTCACTATAATATAAACTATTCTATTGTCAAAGCTAAATCAGATCATGCTATACATACAGACAAGTCTTAAGTCATCTTTTAGTTTTCTAAATTGATTTTTAAGACCATTATTCATATGTATCCTTATTCTTATGTAGAAGGTGCTGTGTCTTTGCTGTACTTTAATGTGAATTGAACCTGCCCCTTGGAATGTTGTGCCACACAGGTCTTTATAAGAATgtgaattaaacatgttttagcATGCATTTAGTGGCATATCGAGTGCGTTTCAATGTCTACCAACACATAACACATTCTGAATAGTCTTaatcttcattttcttcatttggAAAGCATGGAATGACGAAACAATAAATGGATTAAagcattcagatttttttagaCAAAAATGTAACATGGAGACATAGATCTATTACAAAAGACCACTGAATTATGCCTGTATATACAGTTCtatttgaaagtattttcaCATCCTTCATGTAAGacaatgttattcagtgatgcgtttagtttaataaatatcatCCATTCAATTGTTCATCCTCAGTTCGTCTGCTACTCCATGAGAAATCAATGTtgactgtatatattaaataaattatttgtgtgttattgttgaCTTTAAGAAGTATCTCTTATAGTTACCCATATGTGAGATGTATAATTTGAATTGTACAAGAAAAATTTGCTACTTAAATAGACACTTTCTCAGAGATGATTTCTGTtgacatataaaatgtatcaaggCCAGTTTTGGGACCatgatatacatacacacactctagAATAGAAGGATTTTCAAAGGTTAATGAAGGTTGACATAAGATTAGCATTCACAGAGGGTGGCACGATATCAAAGGACCCAATGCTTTAAAGGTATACATTCTTCTGCAGTTTAGGCTGAGCTGGCTCAGATTTGTCTCATAGGAAGAGACAATGATCcatgcatatataaaatgtttctatTGATTAAGTGTgaattattgctttatttgacTTTGAGGAGAGATAAACATCTAGAACTGCTAGTCTTGTACTGCAGGGCTGAGGTGGAAAGAACCAATTGTGGAATATTagaaacatgtttgtgtgtttttttcacgTGAGGTATTTATCTGGGTCACACTAAAAAGAGATTCAAGAGGTTTGGGGGCAAAGACCAGCAGAAAATATTTCACACACTTTGACTGGCTTTCAGAAAACCAGCTCTGATgatgtttaaaacatgtatatctCTGTGTATACTATGTGTAAAAGAAGGGTAGGACAGCTGTTTCTGTCTATGCTTGTGTGATAGAGAGAGCTTGTGGATGTTGGTATTGTGTTACACAGTTTGAACATGAGGGACGTTGCTGTGTTGGGTGGAGGTGGGCGCAGAGAGAGTTTAAGTATGTAGAGCAGTATTTCTGATATATTTGACAAGAGGCAGGCAATCATCTCTAACGTCATTGTAATGAACAGAGACCCTGTACATCCTTTAATAATGACTGGAAATCAGTGTTGCattctttcattaaaaataaaataattgtcgATTATCGATTACCGATTGTGCCCCGACTGGTTTTATTTGTCATCATATTTTGTATAGGTTTCCCAGGAAGCTGTCCACACTGGTATCATTTGATGTGGCTTATCCATCTTGTATCCTGTGCTTTCACTTTGTTTCCCAGGGTGACAGGGTTTCCAGTCTGATGTAATAATGAAAGTACATGCAATATTGCCATTGACATTGTTGCTTTCATGCCAAAGACCTTCACCAAAAAGCAGAGGTATCATTGTACGTTATTAGTctgcttttttcttatttcttgctTCACCCAACATGTTTACGTATTTATTGCTATTGTTTTCTTACCAGCTGTGTCAAATGTGGCCCAgcttcaaaatgtaataaaaaatgtttctccAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36703 lncRNA upstream 151536 45887949 ~ 45888412 (+) True G29291
TU36682 lncRNA upstream 305687 45725983 ~ 45734261 (+) True G29271
TU36579 lncRNA upstream 497742 45539769 ~ 45542206 (+) True G29223
TU36491 lncRNA upstream 661595 45378011 ~ 45378353 (+) True G29153
TU36485 lncRNA upstream 685869 45353716 ~ 45354079 (+) True G29148
TU36736 lncRNA downstream 24090 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 199857 46268675 ~ 46268989 (+) True G29355
TU36782 lncRNA downstream 409674 46478492 ~ 46478774 (+) True G29358
TU36795 lncRNA downstream 441566 46510384 ~ 46531909 (+) True G29368
TU36800 lncRNA downstream 466149 46534967 ~ 46535184 (+) True G29372
AMCG00008218 mRNA upstream 128341 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008212 mRNA upstream 325905 45708568 ~ 45714043 (+) True AMCG00008212
AMCG00008211 mRNA upstream 401159 45599200 ~ 45638789 (+) True AMCG00008211
AMCG00008210 mRNA upstream 550982 45488632 ~ 45488966 (+) True AMCG00008210
AMCG00008198 mRNA upstream 552981 45484630 ~ 45486967 (+) True AMCG00008198
AMCG00008220 mRNA downstream 8489 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008221 mRNA downstream 55312 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008226 mRNA downstream 461632 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008232 mRNA downstream 1554134 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 1645515 47714333 ~ 47716582 (+) True AMCG00008238
TU36524 other upstream 598884 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 696034 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 868120 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 1003532 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2738526 43292596 ~ 43301422 (+) False AMCG00008132
TU36777 other downstream 199073 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 1511395 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 1526286 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 1558478 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 1563372 47632190 ~ 47637376 (+) True AMCG00008232

Expression Profile