RNA id: AMCG00008220


Basic Information

Item Value
RNA id AMCG00008220
length 3341
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00008220
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46077307 ~ 46090993 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGGACTCTGCTGCCTCAGTCCACAGAGCCTTGGCTACTTAGCAGAACCAGAATCAGCACAAACACTTCACTTCATCAAACAATGGCATCAGcacttGACATTGCCAGGTTCAGTTTGGCATGCGACTTTAATAATGCCGATCACCGGACTGACCTGAATGGAACTGATCGTTTGATTGTGCGGAGAGGCCAGCCATTCACCATCACTATGCACCTTCGCTCGGGGCACTTCCAGGCAGGAGTGCACAGCTTCAGCCTCACCACTGAGACAGGGCCTTGTGGATCTGAGGCCAATGGCACCAAGGCCATCTTCCATCTGCAGGACGCCATTGACTACAGTCGCTGGAGTGTTGCAGCATCCTGCCATTCAGGAAATGAAGTGGAATTGTCCATTTGCTCCCCACCTGATGCCCCCATTGGCAAATACTCCCTAACCATGACCCAGGATTATAGGACCATCAATGTAGGGGAGTTTGTACTGCTCTTTAACCCCTGGTGCCCTGCGGATGCTGTGTACATGCCGGAAACTGAGAAGCTGAATGAATATATTCTGGCCCAGGACGGTATCATTTTCCGAGGCAATCATAAATATCCTGTCTCAGATGCATGGAACTTTGGACAGTTTGCACCTCGGATACTGGACATCTGTTTGCGCATTTTGGACACGAACCCCAAATTCTTAAGGAAACCAGAGATGGACTGCTCAGGCAGGAGGAACCCTGTGTATGTGACTAGGGTGGTGAGTGCAATGATAAACTGCAATGATGACAAGGGGGTCCTTTTTGGCAGATGGCAAGATGACTATGCTGATGGTGTAAGTCCCAGTAGCTGGACTGGCAGCGTGGATATTTTGCACTGCTGGGACTCTAAGTCCTGCCAGCCTGTTCGCTATGGACAGTGTTGGGTGTTTGCTGCTGTTGCCTGCACAGTGTTGCGAGCTCTAGGAATCCCTACTCGAGTGGTCACCAATTTCCTGTCTGCTCATGACACAAATGCCAACCTGGTCATCGAGCGCTACTATGATGAAAATGGCCAATCACAAAAAAACTCCGGCGATATGATATGGAACTACCATTGTTGGGTTGAGAGCTGGATGAATCGTCCTGATCTTAAAGCAGGCTTCGATGGGTGGCAAGCCAGTGACCCCACTCCTCAGGAGAAAAGTGAAGGAGTCTACTGTTGTGGACCTGTTCCCCTAAAAGCCATCAAGGAGGGTGAGCTCAAATTGAAGTATGATGTGCCCTTCGTTTTCGCGGAGGTAAATGCAGATGTGGTCACCTATATAAAGCGCAAAGATGGCACCCAAGACAAGGTGAAGGACCACAGTCAGGTCGGAGTGAAAATCAGCACGAAAAGTGTGGGCAGTGACAAAAGGGAAGACATCACCCACCTGTACAAGTACCCTGAAGGCTCAAAGGAAGAGAGACAGGTGTTCATGAAGGCCAACCACCAGAACAAGCTGCTGGACGAACCCCAGGAGCCAGGCCTGGACCTCAAGATCAAGGTTTCTCCCAACATGAAGAAGGTAGGGGTGCCTACTACAATGGTACTACTTTTGGAGCTGAGTGTGGCAAGAAGGACTTGCTCAACCTGCAGCTCTCCCCTGATGAAGTATGGTTCTGCCATTACAAAGGACAATCTGATCAAGCTTGTGGCTCTGCTGATTGAATATCAGACCAACGATACTAAGTTGATCCTGGGTGAACCAAAGCAGAACCGTAAGCTGGCAGCTGAGATCACGCTGCAGAACCCCCTGTCAGAGCCCCTGGACAACTGCTCGTTCTGTGTGGAGGGAGCAGACCTCACCGGTGGCCGAACAATCAAGAAAACGATCAAGTCAGTGGGACCTGGCCAAGAGGCAAAAATGAAAGTAGATTTAACCCCTACTCAGGGGGGTGTCAGAAAGCTGGTGGTGGATTTTAACAGCACTAAACTGCATGACGTCAAGGGATACAGAAACGTCATCATCAGCAAATAGTTTGAATTCAATGAGCACTACGATGTCAAATACAATACCTATGTCGTCGGATGCAGGAagcacaaaaaaatgtattttttttaaatatgttttatatttttattcttttaggCTAGATTAAAATAAGATAATACATAAGATGTATCTAAAGATAAAGTTGTACCAATGGTTATTGGCATGGCAAAAATGCTAAAGCTTTGTAACACACTCTCACTTTTACAGCCAAAACTTGCCTTTAAAAGTACAAGTCTTAAGAATTAAACCCTGTGACCACATTCCCTGCTCTTATCAAACACGTGTGATGTGATGAGTTTATCAGACTGCATGACACAGCAGCGTGTACTAAAGGCAACCTAAAGGTCTTTTAATGCTTGGCTCGCTGATAAGATAGCTGTATGTGCTGTTAGAAATGCCCTACTagaaatgttatattgtttataGATACAGATATCACAGCAAGGGAATCATAAGAGTGCCAGATAGATGAtacaatattatactatattatatcaTGCTTCACTACATTCTTACTAAAACATGTAAAGCACATTGAATATATAGGGTgctacagtaaaacaaatgtgaaacattTCTTCCTTTTGTGGATCATgtgaaatggttttattataggattatcattttatttccacatCTGTATGATGTTTTAGGAAGATCGTTCATGGATTGTCCAATTAACCTTAGAGAAAGGTCTCTACAGCACCGGCCTTCCGGCAGCTAtccataaatacaataattacattaaagatGCTTTGgcatatatacaaatgtgtatgTGAATGATAAAGGAAATCTACAGACTATTACAAATGTTCTctcctttgttttttattatttctttgcttCTTGTATAATTTCTTTTTAAGAGAATTAGTGTTCAAATATTATAGTACACCCATCCCACTGTCAAGAACCCATGAAAAAGAGCCTTCTGCTGTAAGAAAAAGATGCAACTAATTGAATTTAACTGTAGACGTGGATTGTGATGGAGAGATAACACTCACGATTGCATTCAGTGTTGCTCAAAAAGATGCCATGTAAAGGAAACCATACATTAATCTAAACATACAAACCCAGAGCTGCATCCTGCCCAGATGCATTTTTATCCTTGTTGACAGTGAACAATCAAGTTACTGTTGCAAAAGTCATGTCAAGAAACCTATtcaactacatttaaaatggtgTGTACATTTCAGTCCTTATGTGCAAGCCTGTCAGcaaatgtaatgaatgttaACCATATTACAAACCAAAGACaatgacaataaattaataatcattaaaaggCTGATTTGTCTCAGATTTTTTGTATCAAAGGTCTGGAATATCTAGTTGAGATGTCAA

Function

GO: NA

KEGG:

id description
K05625 TGM2; transglutaminase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36703 lncRNA upstream 188895 45887949 ~ 45888412 (+) True G29291
TU36682 lncRNA upstream 343046 45725983 ~ 45734261 (+) True G29271
TU36579 lncRNA upstream 535101 45539769 ~ 45542206 (+) True G29223
TU36491 lncRNA upstream 698954 45378011 ~ 45378353 (+) True G29153
TU36485 lncRNA upstream 723228 45353716 ~ 45354079 (+) True G29148
TU36736 lncRNA downstream 1915 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 177682 46268675 ~ 46268989 (+) True G29355
TU36782 lncRNA downstream 387499 46478492 ~ 46478774 (+) True G29358
TU36795 lncRNA downstream 419391 46510384 ~ 46531909 (+) True G29368
TU36800 lncRNA downstream 443974 46534967 ~ 46535184 (+) True G29372
AMCG00008219 mRNA upstream 8489 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 165700 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008212 mRNA upstream 363264 45708568 ~ 45714043 (+) True AMCG00008212
AMCG00008211 mRNA upstream 438518 45599200 ~ 45638789 (+) True AMCG00008211
AMCG00008210 mRNA upstream 588341 45488632 ~ 45488966 (+) True AMCG00008210
AMCG00008221 mRNA downstream 33137 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008226 mRNA downstream 439457 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008232 mRNA downstream 1531959 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 1623340 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 1710105 47801098 ~ 47813090 (+) True AMCG00008239
TU36524 other upstream 636243 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 733393 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 905479 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 1040891 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2775885 43292596 ~ 43301422 (+) False AMCG00008132
TU36777 other downstream 176898 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 1489220 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 1504111 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 1536303 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 1541197 47632190 ~ 47637376 (+) True AMCG00008232

Expression Profile