RNA id: AMCG00008221


Basic Information

Item Value
RNA id AMCG00008221
length 3175
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00008221
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46124130 ~ 46131017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACGTAGTTCAAAGTGGCAAGGTTCTAGCAGCAGCACTGTAGTGAGCCCATGCTGGCAGTGCTCGCAACGCTAGGGCTCACCGTGGGCATGTTACAGTACAAGTAGTGTTTCCGTGCGCTGGAGTGGTTTGCCTAAGCATGGCGTTAACTGATGACCCCAAGGTGGCCTTCGGTGCCCTGCGGCCGGTGTGCGTGCAGCTGACCCGAGAGCAGACGCTGCGCAACGTGGAGCAGCTCCGCGCGCAGCTGCAGGGGGTGAGCGAGGCAGCACTGCAGCAGTTGCAGGACTACGTGCTCTTCCCTCTGCGCTTCGTCCTCAAGACCCCAGCCTCCAAGAAAGAGCGTCTGATCCAGGCCGTGGTGGAGTGCATCGGCTATGTCCTCGCCAACACCTGCGTGCAGAAGTGGGACCTGCTGCGCGACCTCTTCTCCGAgctctgcctctgtctctgctCCCCAACAGATCCAGGCAAGCCTGCTCCCGTTTCGGACGAACTGAAAACGGCTGTTCTCCAAAGCTTGGATGCCCTCTTGCATGCAGCGTACGGGGACATCCTCCCTCGGCTGTATGAGCCCGTCATGCTGCCTGGTTTGGGCCTCGCCATCTCCCTGCTTTTAGAGCTGGCAGAGCGGGAGAAGTCAAGACAAGTTCAGGCAGTAGCCCTCAAGTGCCTCCAAGTTCTCCTTCTCCAGTGCAACTGCCCAGAGGGACACTGGTCAATGAACCAGGAGGAGAAATGGAAGATGGGGAGCACTTTCGCCTCCTTCTTACCCGGGATCAGCCGTGGCTTGTCTAGGGTCATCACGGGTGATATGAAACAAGGGCACGTTGTGGCAGTGAGCGCGATGAGAGTCTGGTATAAGACGGTAGGCCTGGTGATGGCTGACGAGCAGCTCTCCGACAACAAGGTCAGGGAGAAACCGGCAGCTGAGCTGGGGAGAGTCGGGGAGCTGATGGTGCAGAGGACGCCAGACTGGGCTAAGGACACTTCAGGAAAACTGGCTATACATTTAAAGAAGATTATTGCTTGCACTTCAGCTCACCAGCATTGGAAAGTCAGGCTAGAGCTGGTGGACTTTTCAAACCACCTCCTTTGTAGTTGTCACAGTTCTTTGGGGGAATGTATCGGCCCCCTTCTGGAGGCTCTGGTGGGTCTGGTGAACGATGAAAATCAAACGGTCCGGGAATGGTGCGATAAAGCTTTAAAGCGAATAGCCCAGCAGAATTTGACAGGTGGGAACCGGACACTTACAGACGTTCTATCTGAGAACCTGCATTCCCTCACCACGGCCCTGCCACGCCTGATTAGAACATCAGATGACCAGCACAAGTTGTCCACTCTGAATGTGTTCCTAGGTTACCTGAAGATGCTGGGGCCGCAGGTGGCAATGGTGCTCAACTCGGCGGCTCACCTGCAGCGGATCTCCAAAGCACTGATGCAGGTTTTGGAGCTGGATGTGACTGATGTCCGAATTGTGGAGGGGAAAAGCTCTGGGATCACAGATGAATCGGCGGCCTTGCTTTTCCAAACGAGGCCTCAGAGAAAGCACTTCCAGTATTTCACGGACGATCAGATATTCTCCCTGCTTCGGCACATCTGCAGGGTGCTCGGCTACTTTGGAAACCTCTATCTCTTAGTGGACCACTTTATGGACCTTTATCGGGAGTCATTAGTCTACAGAAAGCAGGCCGCCTTGGTTCTCAATGAAATCATCAAAGGAGCCGCTGGCATTGATGTGGAGGTGACTGAAGAGCAATGCCCAGCAAGCCACGATGATCTAATGGCAGCAGTAACTTCCATCATCGAAGAATATACCAGCCTGTGCAATTGGCATTTAACTACCTCTCATGAGGAATCTGAGAAAGGAGACTCTTTTGGGCAGCCTACAGTGCTGTCCATTATGAACAATGCTCAAGGAGGTTGTCTCCAGGTTACTTCGGCGAGCAAAGTATCAACAATTCGTCAGATGAACAGCAACATCTGGCAGGTTTGCATCCAGCTGGAAGGGATTGGCTGTTTTGCTCTTGCTCTGCGGACGGAGTTTCACCTGCTCTTGATCACGACGCTGTACCCTGTGTTGGAGAAGGCTGGGGATGAAAGCTTGCTGATAAGCCAGTCCGCTGTGGACGCCATGAGGAACATCTGCACTGCTTGTGGCTACGGCTCTTTCAAGGACCTCATCAACCAAAACTCGGACTACCTGGTCAACGACATCTCCCTCAATCTGCAGCGGCTGAGCCGGCACCCCCACACTCCCTGTGTCCTGAGCGTCATGTTCACTTACTCAGATGCCAGCTTGCTCCCGCTAGTAGGAGACATTATCCAAGATGTGCTGATGGCCTTGGACCACTGCTACGATGAGAGAGCGCCCATGTTTTGCACAGTCCTGCATTCACTCATGAAGGCATTAGCAAGGTGGTTCCCGACCgagaaaaggaaaatgagtGAATCGGACCCAGGAGTTATGAAGGACGCTGCGGGGGACGGGAAGGGCTTGTTGGATGTGAAGCAGTTTCTCGTGGACTACCGCCGACAGAAAGAGCTGGCGGAGGGCAATTTTGCGGACGAAGAGGATATCAGCGATACAGAAGTGCCTCTGACTGCCCCTGAGCCTGACGTAGATATGGAAGCCCCCGATGTGAAAGCTGCTCTCCCGTCTCACATCACCATAGCCAAGGAGGTGATGGAGAGGAGTATCCATCTGCTCTCAGACCCCAGTCTGCGGCTCAGGCTCAAGgTGCTGGATGTGCTGGAGTTGTGCGTCAGGGTGCTGCAGGGCGACGAGAGGGAACTCCTTCCGATGGTGCATCGTGCCTGGCCCCCCCTCCTCGTCAGACTCACGAACGATGACCCCCTGGCAGTGCTCCGAGCTTTCCAGGTGCTGTGTACCCTGGGAGAAACCTGTGGGGATTTCCTCAGGAGGAGAGTGTCTAAAGACGTGCTCCCACGCCTCACTGCCTCCTTAGTGAAGCAGGCCCCGCTCAGTGCCAAGGCTGGACCCATCTTCACCCACACGCTGGCCTACAAGCTGCAGCTGGCCGTACTGGAGGGGCTGGGGGATCTGTGTCTCCGACTGGATCTAGACTTGCACACGCTGCTGCTGAGTGGCATGGGGAAACAGAGGAATGAATTCACTGACAACATCCTCAAGCTTCTGGAGTTGATAGCGTGA

Function

GO: NA

KEGG:

id description
K20403 TTI1; TELO2-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36736 lncRNA upstream 30641 46092908 ~ 46093489 (+) True G29320
TU36703 lncRNA upstream 235718 45887949 ~ 45888412 (+) True G29291
TU36682 lncRNA upstream 389869 45725983 ~ 45734261 (+) True G29271
TU36579 lncRNA upstream 581924 45539769 ~ 45542206 (+) True G29223
TU36491 lncRNA upstream 745777 45378011 ~ 45378353 (+) True G29153
TU36779 lncRNA downstream 137658 46268675 ~ 46268989 (+) True G29355
TU36782 lncRNA downstream 347475 46478492 ~ 46478774 (+) True G29358
TU36795 lncRNA downstream 379367 46510384 ~ 46531909 (+) True G29368
TU36800 lncRNA downstream 403950 46534967 ~ 46535184 (+) True G29372
TU36804 lncRNA downstream 592616 46723633 ~ 46723895 (+) True G29376
AMCG00008220 mRNA upstream 33137 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008219 mRNA upstream 55312 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 212523 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008212 mRNA upstream 410087 45708568 ~ 45714043 (+) True AMCG00008212
AMCG00008211 mRNA upstream 485341 45599200 ~ 45638789 (+) True AMCG00008211
AMCG00008226 mRNA downstream 399433 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008232 mRNA downstream 1491935 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 1583316 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 1670081 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008242 mRNA downstream 1758965 47889982 ~ 47892071 (+) True AMCG00008242
TU36524 other upstream 683066 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 780216 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 952302 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 1087714 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2822708 43292596 ~ 43301422 (+) False AMCG00008132
TU36777 other downstream 136874 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 1449196 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 1464087 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 1496279 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 1501173 47632190 ~ 47637376 (+) True AMCG00008232

Expression Profile