RNA id: AMCG00008222


Basic Information

Item Value
RNA id AMCG00008222
length 2148
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00008222
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46111936 ~ 46123767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTATGAACTGTGGGTAAAAGGTCACACGGCCATCTTGTTGGCAACAGATCcaggtgtttgtttttactactACAACATAACATTACAGTTTGGAAACTCAAGTGGGATATCGGGGCAAACGGCGAGCACAGGGGCAGCTCGGAGAAGACTGAGAATGAGGTGTTTGTATAAATGTGGCGTGTAATCGATATATTATGATCGGAAGTTTGCCAGTTTATCCCAAATCATACGTATGGTAGCCTGAAGAGCCCCCTTCGTAACAGGCTGTTATGTGGGCAAGAGTTGTTTAGAGTAAGATTGTAAATGTCTTGTACAGGTCAATCGGACGCAAGGCGGATTTGCGGTTAGAAAACCAGTGCATATTGAAAACCAGTGCATTTTGCGTAACTTTAAAGTTTGTTCCTGGTTTTCCGAGAAGCGGTGTTGTTTTTGCATCAGCAGAGTAACTACTGAACACATTGTCTATGTTTTGTCGATGCATTTCGATCATTCACTAAACCACCTGAGCTTTAAAAAGTAGAAAAGGGAGTTTTAGGTCCTCTAAAGTGAACTGGAGGGACCATCCTGCCAGGATCCCTGCTTCACCGGAGCCTGGACTCAACTTAGTTTGATGCAGCGTGTAGTCTACTGATAACACACTAGCTGTGTAGTGTGCGACCTGATCACACAGTTCACCTCAGACGGATCCACGAGTGGAGGAGACATGTCGTCCTTTTCCGAGTCTGCGCTGGAGAAGAAGTTGTCGGAGCTGAGTAACTCCCAGCAGAGTGTGCAGACCCTGTCCCTGTGGATCATCCATCACAGAAAGCACTCGTCTCTTATTGTGCACGTCTGGCACAGGGAAATGAAGAAAGCCAAAAGCAACAGGAAGTTGACCTTCCTGTACCTAGCCAATGATGTTATCCAGAACAGCAAGAGGAAAGGACCCGAATTTACCAAGGATTTTGAGACCGTCCTGGTCGATGCCTGCTCCCATGTAGCTAGAGAAGCAGATGACGGGTGTAAGAAACACCTGGAACGGTTGCTCAACATCTGGCAGGAGCGCAGCGTATACGGGGCCGACTTCATCCAGCAGCTCAAGCTGGCCATCGAGGACTCCAACAGCCCCAAACAGAAACCGCAGGGTAAGCAGGCAGGAGGCAGACGAGCAAAACACTCCCAACCAGAGCGCTTCAAAGCAGTACAGGCAGTAAAAAATCAGCGCAAACCAAGCCGGAAGAAGGTTGAAGAAGTGGAGGAGAAGAAAGCCACCAAACGCACCTACCAGAAAAttcaggaggaagaggaggaggaagatgacgATTACAGGGGACACTACTCTCCACAGGAAAACGATGTTAGCGGGCCATTGCTGACCGAGGAACTGATTAAGGCCCTACAGGACCTGGAGAACGCAGCCTCTGGAGATGCGGCCGTTCGCCAGAAGATAGCCTCGCTTCCCCAGGAGGTGCAGGACGTCTCCTTGCTGGAGAAAATCACAGACAAGGAGGCTGCGGAAAAGTTGTCGAAGACAGTGGACGAGGCCTGCCTCCTGCTGGCCGAGTATAACGGGCGACTGGCTGCTGAGCTGGAGGACCGGAGACAGCTGGCCCGCATGCTTACAGAGTACATCCACAACCAGAAGGAGGAGTACAAACAGAAACTGGCACGGGTGACGCAAGTCCGAAAGGAGCTGAAATCGCACATCCAGAGCCTGCCTGACCTCTCGCTGCTGCCCAACGTCACAGGCGGCCTGGCACCACTGCCCTCCGCTGGTGACCTTTTCTCCACTGACTGAGGAGGACCTGTCCATTTGAGTTCCTTTCCCTTAGAGGAGTCCCCCGCTGGTGGCTCCAGGTGGAAGCTGTGACAGGGCTTTTATTATGACTGAGGCAGTCGCTCCTGGAGGGCCACAATCGCTAGAGGGTCAATAGCCTGGAAAACTCACAACCGGGGGCCCTTCCGTAGAAAACCAGGGAGAATTTCCACCGAGGGGCGTTTCAGTTCCTCTGAGGGAAAGGGGGATTACAGACTATGATTCCTGCTTCACCAGcttgaaaactggaaaaacaaaacaaaaaatctaccTTGAGCAGCCTGGAGAAtagttttatctttattttatatgaaaaaaaaaaaaaaaaaaaagtcctcctcccccccccccc

Function

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36706 lncRNA downstream 132468 45979260 ~ 45979468 (-) True G29294
TU36696 lncRNA downstream 317985 45793678 ~ 45793951 (-) True G29284
TU36650 lncRNA downstream 397899 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA downstream 397899 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA downstream 397899 45686238 ~ 45714037 (-) False G29249
TU36772 lncRNA upstream 126896 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 144126 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 532467 46656234 ~ 46656566 (-) True G29375
TU36805 lncRNA upstream 599866 46723633 ~ 46723895 (-) True G29377
TU36809 lncRNA upstream 780025 46903792 ~ 46904222 (-) True G29381
AMCG00008216 mRNA downstream 324955 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008214 mRNA downstream 351154 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008213 mRNA downstream 387509 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008215 mRNA downstream 449589 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008217 mRNA downstream 470133 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008223 mRNA upstream 13981 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008224 mRNA upstream 77025 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008225 mRNA upstream 111236 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008228 mRNA upstream 623426 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008229 mRNA upstream 834098 46957865 ~ 46964572 (-) True AMCG00008229
TU36715 other downstream 57590 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 1693740 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3347282 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 4262046 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4910111 41199489 ~ 41201825 (-) True AMCG00008069
TU36785 other upstream 357179 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1590167 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2000158 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2157575 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 3672204 49795971 ~ 49900951 (-) True G29928

Expression Profile