RNA id: AMCG00008223


Basic Information

Item Value
RNA id AMCG00008223
length 510
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00008223
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46137748 ~ 46150163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGCACTCTTCACTGAGGTCCCCCATGACATCACAGCACGCAGTGGCCAGGATGTGGAGATGGCCTGCTCCTTCCGGGGGGCTGGCTCCCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATCAGGAATCACAAGGATTGGACAGAGAAGCAGACCTGGACCACCAACCAGGTGGTGAAGGTAGCGGGCAGCAACATTTCCCACAAGCTGCGTCTGTCCAACATCAAGCCCTCCGACGAGGGGACATACGAGTGCCGGGTGATTGACTTCAGCGACAGCAAGGCCAGGCACCACAAGGTTCGGGCCTACCTCCAAGTGGAGCCTGAGCAGAGCTCTGGACTGCACCACCCCGGATCTGGATCTCAGGACACCAAGCCGGGCAGCCACGCCAATGACCGCGCCAAGCACGCTCCCTCCCAGGCTCACAGCCACCACAAAGGGGGCAGGGAACTGAAGAAACGATCTGCAGACAGCGACAATGACTGCACTGACAGCCGTGTCCCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36706 lncRNA downstream 158280 45979260 ~ 45979468 (-) True G29294
TU36696 lncRNA downstream 343797 45793678 ~ 45793951 (-) True G29284
TU36650 lncRNA downstream 423711 45599559 ~ 45714037 (-) True G29249
TU36772 lncRNA upstream 100500 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 117730 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 506071 46656234 ~ 46656566 (-) True G29375
TU36805 lncRNA upstream 573470 46723633 ~ 46723895 (-) True G29377
TU36809 lncRNA upstream 753629 46903792 ~ 46904222 (-) True G29381
AMCG00008222 mRNA downstream 13981 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008216 mRNA downstream 350767 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008214 mRNA downstream 376966 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008213 mRNA downstream 413321 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008215 mRNA downstream 475401 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008224 mRNA upstream 50629 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008225 mRNA upstream 84840 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008228 mRNA upstream 597030 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008229 mRNA upstream 807702 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008230 mRNA upstream 831173 46981336 ~ 47013277 (-) True AMCG00008230
TU36715 other downstream 83402 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 1719552 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3373094 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 4287858 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4935923 41199489 ~ 41201825 (-) True AMCG00008069
TU36785 other upstream 330783 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1563771 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1973762 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2131179 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 3645808 49795971 ~ 49900951 (-) True G29928

Expression Profile