RNA id: AMCG00008224


Basic Information

Item Value
RNA id AMCG00008224
length 957
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00008224
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46200792 ~ 46234987 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCAAAGATTCTGTCACACAGTCAGATGCCATGCCATAGCTGTGGTGGATCTGTTACAGGAGCTGACAGATATTGACACGCTTCACGAGAGCGAGGAAGGTGCGGAAGTGCTTATAGATGCCCTGTTAGAGGGACAAGTGGTAGCCTTGCTGGTACAGAACATGGAGCGCCTGGATGAGCAGGTGAAAGAGGAGGCCGATGGAGTCTATAACACCCTGGCTATTGTTGAGAACATGGCCGAGTTTAGACCTGGGATGTGCACAGAGGCGTCACAGCAGGGTCTTATGCAGTGGCTGCTGAAGAGAATAAAGGCAAAGATGCCGTTTGATGCCAACAAACTCTACTGCAGTGAAATCCTGGCCATTTTACTGCAGAACAATGATGGAACCAGAGAGCTCCTGGGCGAACTGGACGGGATTGACGTTCTACTGCAGCAGCTGTCTGTGTTCAAGCGGCACAACCCAGCCACGGCAGAAGAGCAAGAGATGATGGAGAATCTGTTCGACTCGCTGTGCTCCTGCCTCATGCTGGGAGCCAACAGGGACCGCTTCCTCAAGGGAGAGGGCCTGCAGCTGATGAACCTCATGCTCCGGGAGAAGAAGATGTCACGCATGAGTGCCCTGAAGGTGTTGGACCACGCCATGATCGGCCCTGAGGGCTCGGACAACTGCCACAAGTTCGTCGACATCTTGGGCTTGAGGACCATCTACCCGCTGTTCATGAAGACCCCCAAGAAAATGAAGAAGGCTGGGCTGTCAGACAAGGAGCATGAAGAGCATGTGTGTTCCATTATTGCCTCGATGCTGAGAAACCTTAAAGGCCAACAGAGAACTCGTCTCCTCAGCAAATTCACAGAGAATGACTGCGAGAAGGTTGACAGACTGATGGAGCTGCATTTTAAGTACCTGGAAGCGGTGCAGTTGGCTGACAAGAACATTGAAGGAGAGAAGCAC

Function

GO: NA

KEGG:

id description
K12864 CTNNBL1; beta-catenin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36706 lncRNA downstream 221324 45979260 ~ 45979468 (-) True G29294
TU36696 lncRNA downstream 406841 45793678 ~ 45793951 (-) True G29284
TU36650 lncRNA downstream 486755 45599559 ~ 45714037 (-) True G29249
TU36772 lncRNA upstream 15676 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 32906 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 421247 46656234 ~ 46656566 (-) True G29375
TU36805 lncRNA upstream 488646 46723633 ~ 46723895 (-) True G29377
TU36809 lncRNA upstream 668805 46903792 ~ 46904222 (-) True G29381
AMCG00008223 mRNA downstream 50629 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008222 mRNA downstream 77025 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008216 mRNA downstream 413811 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008214 mRNA downstream 440010 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008213 mRNA downstream 476365 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008225 mRNA upstream 16 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008228 mRNA upstream 512206 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008229 mRNA upstream 722878 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008230 mRNA upstream 746349 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008227 mRNA upstream 811735 47046722 ~ 47068199 (-) True AMCG00008227
TU36715 other downstream 146446 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 1782596 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3436138 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 4350902 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4998967 41199489 ~ 41201825 (-) True AMCG00008069
TU36785 other upstream 245959 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1478947 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1888938 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2046355 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 3560984 49795971 ~ 49900951 (-) True G29928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031623 True 2018 mRNA 0.50 16 NC_007113.7 53720028 ~ 53815532 (+)
grasscarp (Ctenopharyngodon idella) CI01000075_00952466_00992777.mRNA True 2076 mRNA 0.50 17 CI01000075 952139 ~ 992777 (-)