RNA id: AMCG00008229


Basic Information

Item Value
RNA id AMCG00008229
length 528
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00008229
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46957865 ~ 46964572 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGGGAGGAGGGTTCTCGTGCTTCTCATCTTGACGCTGAAGCGCCACCGCAAGGGCCAGCGCATGTCCGAGGATGAGGAGGACATGAGAGACAATGTGATCAAGTACAACGACGAGGGCGGGGGCGAGCAAGACACGCAGGCCTACGACATGAGTGCCCTGCGCAGCCTGTACGACTTCCCCGAGGTGAAGGGCGCCGACTCGGGGCCAGACCTGCACTCGCTGCCCCAGTGGGTCCAGAGCCACGTGGGTGGGGGGGACGGCCTGGCAGACTTCTCCATGTTCCGAGGCTACATCCGCAAGAAGGTGGAGCAGGCCGACGCTGATCTCTCGGTGCCCCCCTACGACTCCTTCCAGACCTATGCCTTTGAGGGTTCCAGCTCTCCGGCATTGTCCCTCAGCTCTATCAACACCCTCTCCACCACCTCCGAGCAGGACTTCTCCTACCTGTCCAACTGGGGACCACGCTTCCGCCAACTGGCCAGCCTCTATGCAGCAGGGCACCCCGAGGAGGAAGGTTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36811 lncRNA downstream 23597 46931359 ~ 46934268 (-) True G29383
TU36809 lncRNA downstream 53643 46903792 ~ 46904222 (-) True G29381
TU36805 lncRNA downstream 233970 46723633 ~ 46723895 (-) True G29377
TU36803 lncRNA downstream 301299 46656234 ~ 46656566 (-) True G29375
TU36778 lncRNA downstream 689587 46267893 ~ 46268278 (-) True G29354
TU36825 lncRNA upstream 154065 47118637 ~ 47121378 (-) True G29397
TU36832 lncRNA upstream 445215 47409787 ~ 47410050 (-) True G29403
TU36839 lncRNA upstream 565860 47530432 ~ 47530659 (-) True G29410
TU36859 lncRNA upstream 615716 47580288 ~ 47582074 (-) False AMCG00008233
TU36921 lncRNA upstream 702070 47666642 ~ 47918462 (-) False AMCG00008245
AMCG00008228 mRNA downstream 210307 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008225 mRNA downstream 719336 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008224 mRNA downstream 722878 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008223 mRNA downstream 807702 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008222 mRNA downstream 834098 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008230 mRNA upstream 16764 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008227 mRNA upstream 82150 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008231 mRNA upstream 127719 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008233 mRNA upstream 615567 47580139 ~ 47607012 (-) True AMCG00008233
AMCG00008234 mRNA upstream 651281 47615853 ~ 47619787 (-) True AMCG00008234
TU36785 other downstream 475967 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 903519 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 2539669 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4193211 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5107975 41846933 ~ 41849890 (-) True AMCG00008085
TU36922 other upstream 749362 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1159353 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 1316770 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2831399 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 3089253 50053825 ~ 50054102 (-) True G29974

Expression Profile