RNA id: AMCG00008230


Basic Information

Item Value
RNA id AMCG00008230
length 573
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00008230
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46981336 ~ 47013277 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGAGAGTCTTCTTACATCACTGCAAGACCAGGTACTCCGCATTCGCACTCTCTTCTGTCATTGCAGATAACCCAGCCCAGGCCACCAAGACCTCCATCAGCATCCGCATCCTAGACGTGAACGATAACCCCCCTGAGCTGGCCACTCCTTACGAAGCCTCCATCTGTGAGGACGCCAAGCCTGGTCAGCTCATTCACACCATCAGCGTGGTGGATCGAGATGAGCCACAAACTGGACATCGCTTCTACTTCACCTTGGCCCCAGAGGCTGCCAACAACCGCCACTTCACCCTTTGGGATGTCAAAGACAACACGGCAGGCATCAGGACACAGCGCACTGGCTTCAACAGGCGGGAGCAGAACGTGTACCTGCTGCCCATCCTGGTGGTGGACAGCGGGCCGCCCGCCCTGAGCAGCACCGGCACTCTGACCATCCGCGTGTGCGGCTGCGACACCGAGGGCACCATCCAGTCCTGCAACGCCACCGCATACGTCATGTCAGCCGCCCTCAGCCCCGGGGCACTCATCGCACTGCTAGTCTGTATGCTCATCCTCATTGGCCAGGGATGA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36811 lncRNA downstream 47068 46931359 ~ 46934268 (-) True G29383
TU36809 lncRNA downstream 77114 46903792 ~ 46904222 (-) True G29381
TU36805 lncRNA downstream 257441 46723633 ~ 46723895 (-) True G29377
TU36803 lncRNA downstream 324770 46656234 ~ 46656566 (-) True G29375
TU36778 lncRNA downstream 713058 46267893 ~ 46268278 (-) True G29354
TU36825 lncRNA upstream 105360 47118637 ~ 47121378 (-) True G29397
TU36832 lncRNA upstream 396510 47409787 ~ 47410050 (-) True G29403
TU36839 lncRNA upstream 517155 47530432 ~ 47530659 (-) True G29410
TU36859 lncRNA upstream 567011 47580288 ~ 47582074 (-) False AMCG00008233
TU36921 lncRNA upstream 653365 47666642 ~ 47918462 (-) False AMCG00008245
AMCG00008229 mRNA downstream 16764 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008228 mRNA downstream 233778 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008225 mRNA downstream 742807 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008224 mRNA downstream 746349 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008223 mRNA downstream 831173 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008227 mRNA upstream 33445 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008231 mRNA upstream 79014 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008233 mRNA upstream 566862 47580139 ~ 47607012 (-) True AMCG00008233
AMCG00008234 mRNA upstream 602576 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008235 mRNA upstream 619053 47632330 ~ 47639937 (-) True AMCG00008235
TU36785 other downstream 499438 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 926990 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 2563140 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4216682 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5131446 41846933 ~ 41849890 (-) True AMCG00008085
TU36922 other upstream 700657 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1110648 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 1268065 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2782694 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 3040548 50053825 ~ 50054102 (-) True G29974

Expression Profile