RNA id: AMCG00008231


Basic Information

Item Value
RNA id AMCG00008231
length 621
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00008231
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47092291 ~ 47117500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCTTCCTGGAGATTGGGAACCCCTTTTCTGCTGCTCATTCTGGGGGTTTTGGACCAGTGTGGCTCTGTGTTCTCCATGGTCAAAAGGACTAGCGTGGCTCAGGGTAAAGCTGAGGACGAGGGCTTGATGTCACATGAGCGAGTGAAGCGAGGTTGGGTGTGGAACCAGTTCTTTGTCGTGGAGGAGTACACTGGAACTGAACCCCTCTACGTTGGAAAGATCCACTCGGATTCAGATGAAGGAGATGGCTCCATCAAGTACACTATCTCAGGCGAAGGCGCGGGCACCATCTTCATCATCGACGAGATCACGGGTGACATCCATGCCACCGAGCGCCTGGACCGGGAGGAGAAGACCTTCTACACCCTCCGCGCGCAGGCCCGGGACCGCCTCACTGACCGGCCTCTTGAACCCGAGTCCGAGTTCATCATCAAGGTGCAGGACATCAACGACAGCGAGCCCAAGTTCCTGGAGGGACCCTACATCGGGAGCGTGCCTGAACTGTCACCCATCGTGTTGAGCTGCAAGCGCAGTGTTAAAGAGTTAAAACCAGAGGAGTCTTGTTCAGCATGGCAATTGGAAGATGATGTCCTGAATGGAAGAAATAGTGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36811 lncRNA downstream 158023 46931359 ~ 46934268 (-) True G29383
TU36809 lncRNA downstream 188069 46903792 ~ 46904222 (-) True G29381
TU36805 lncRNA downstream 368396 46723633 ~ 46723895 (-) True G29377
TU36803 lncRNA downstream 435725 46656234 ~ 46656566 (-) True G29375
TU36778 lncRNA downstream 824013 46267893 ~ 46268278 (-) True G29354
TU36825 lncRNA upstream 1137 47118637 ~ 47121378 (-) True G29397
TU36832 lncRNA upstream 292287 47409787 ~ 47410050 (-) True G29403
TU36839 lncRNA upstream 412932 47530432 ~ 47530659 (-) True G29410
TU36859 lncRNA upstream 462788 47580288 ~ 47582074 (-) False AMCG00008233
TU36921 lncRNA upstream 549142 47666642 ~ 47918462 (-) False AMCG00008245
AMCG00008227 mRNA downstream 24092 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008230 mRNA downstream 79014 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008229 mRNA downstream 127719 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008228 mRNA downstream 344733 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008225 mRNA downstream 853762 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008233 mRNA upstream 462639 47580139 ~ 47607012 (-) True AMCG00008233
AMCG00008234 mRNA upstream 498353 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008235 mRNA upstream 514830 47632330 ~ 47639937 (-) True AMCG00008235
AMCG00008236 mRNA upstream 525479 47642979 ~ 47676750 (-) True AMCG00008236
AMCG00008237 mRNA upstream 600207 47717707 ~ 47742362 (-) True AMCG00008237
TU36785 other downstream 610393 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1037945 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 2674095 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4327637 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5242401 41846933 ~ 41849890 (-) True AMCG00008085
TU36922 other upstream 596434 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1006425 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 1163842 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2678471 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2936325 50053825 ~ 50054102 (-) True G29974

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU568984 True 1028 lncRNA 0.52 5 CI01000340 17721981 ~ 17753831 (+)