RNA id: TU36872


Basic Information

Item Value
RNA id TU36872
length 3708
RNA type TUCP
GC content 0.45
exon number 2
gene id AMCG00008232
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47622952 ~ 47671421 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattctcaAAAGTGTAACTTAATTACTGCATCTGTTTAAAGTAGTGCAATACaaatcatagccaaaacacaatgtaggatttgaaagttttataaatatccagtatagtttcagttttattctgtattcattttcattagatTACTCTCTGTGATCGGAGACTGcttgtcattttgtttattaacatCCAGTcaacatttacaaacataccatttttcttttagttaattttgaaaagcaatttaatcattttaataaaacatttattgatttataagcCCCACTCCTCAATGGGCGTGCGTTTCAGTGTTCAACGCCACTGTGCAGAAAATCACTGGATTAAGGCTGAAGTCTGACTAAGgattttacagtaatttgaaaaatattaagcCAGTAGTTGcagaatgtgtgtgttattgGTGGAATGTGCCGATACAGATTTCTGTAGAAGGTCAAATCAGCCAATAGTCTGTGCCCCGATCCGTCGGGCCCCATTTAGGACTTTCTGCCTTCTCGAGAGTTTTACCATAATATGCAAAACTTGTCAAATGCATGTTTCCATATATTCTACAATTCCAATAACCAGATACTAATCTGAAACTAGAGATTAATAGTTCATTTGAATtaagtttttaaattttaacaGAGTATTGGAAGACAAAATGTCAGTGACCATGTGCCAATGAATGATCAGTTACCAGATCCCCTTGGCATCTAGAGTTGAGCAATTCATTTAATCTTACCAGTGTTGAAGATCACAGAGCTACTTCATAACTAGACTTCACAGTAGTGCAAGTCATTTTATTCAGGTTTCCTTCACCAGCTAGTAGTTGTAGTTTTCTAAAGTAGAAGCAACAACTATACAAGCTCTGATGCAGAGTGAGGAACACCTGTCTGCCACCAGAACTGCagattaaaagaacaaaactttGTAAAGAAGTCTAAAAGAccaggtttatttaaaaaatattacaccaaaaatacaaaacaaactatacaaGAGCTTGACTTGTGAAGCAGACTCCGGAAGATGGGGCCGACATCTGAGGTCAAGTGACGTCTGGAAAGAGGGCTCAGGGTCTGGGGGGGCGCATTCCCGGAGGAGGAGGGCCTGAGGAAAGATGCGTTATAAAAAGGAGTCCGTATGGGAAAGCAGTGGAGCACAGCAGAGCTCAGTTCACTGCCCTGAAACAGCCTTACTTGCCAACCCTAAAGAACAGTTCAACACTAAAGCCAAATGAGCTCCCTGAGGCCACATTAAGAGTTACATTAGTTATCAATGCAATGCTACTCTGCATGTGGACCTTACCTCTCATCCCAGGAGGTGGTGGTCTCATTCCTGGAGGGGGCATTCCCATGGGGGCACCACGACCAGGCGGCATGCCCATTGGGGGACCCATGGGTGGCCGCATGCCTGGGGGAGGACCCATCATACCTGCAGGAGGAAAGACCAGAGTTTTAAAAAGCTGCCAACAGAATAGATGCCTTTTAGTTCACATCCTAACAAATGGTGCAGTTTTGTTGGCTAAAATCAACTCAGAAGGAGCTCAGTCTGCAAAGCTGAGGAAGATAAATGAATCACCCCCTCTATACACCCCTGTCAGAACAAACCCTTTCCCCTGCAAGACCACTCTGCAGGACAAACCCATCTGACTGCTTTGCACAATGGGAAGCCGGCATCTATACCATTCTCAGTCATGGTATTGTTTCCCAGGCAATCATCTTTTCCACAAGCCAGAATTAAAGTGTCGCAGTGAGTAGAGGGCGTCTACAACAGAAGGACTGTAATCCAGCTGACAGACCGGAGCTCAGAGTAATCCTGCTTCAATAAGCTTCAGCATCATGCTCAGCTCTAGACTGAAAGTCATCACTGCTCCAGCCACCAAGCACTGAAAGACCTGCACTCAACTGCTGACCTCcatttaaagctttaaaggTCGCAGGATTAGATCCCTATATAGGATATAGTTGAAGGAGTAAGGCTTGGCAATTATTCTGTGGACAAGTGTTCAGGTAGGAGAATTCTGCAGGATGTGCCCTGGAATACAGGGACAACCAAGGTACAGGCAACTACACCTCAAAAACAACTTTGCGATTAAACTGATGCCCTGCAGTTTCTAGCAGACTCACATCTTTGGGAGGAGGGCCTTCCACGGTCATTGACACCAGGTTCTCTCCTCTGAGCAGCACCAGGCCCAGCACACGCTTCTCCTCTCGCTCCGGCTGCTTGGAGTTCTTGGGCCTAAGAAGGATTTCCAAGGTCAGTGGTGAGCAAAACCGGCAGAGCACGCTCCTTTACACAACACACTGTGCCACAAAGCATCACAGCTGAAACTGATGATTAGCCAATGCttaacatgcatatatattacagttattCTAGATGGGTACACAGGACAGTAGGGCTGCAGCTCAGAGTAATCCTGCTTCAAAAAGCTTCAACATTAGGCtctgtttaaaattgaaaatcatCACCACTCCAGCCCACTGCTGATAGGACAAGAATATTCTAGCCAGGTAAGCCACCGGTGCTTTAAGTGTCCACTGGATTTAAAAACTTCCCAAAAAATTCCCCCTTCTGAATAACACAACAGGAACTTATTTTGAGCCCCGCTGCTGTCTGGAGGGAGCCGGGTGCACAGCCGCACTACGCCCCGGACTCTTACTTGATCTTCCTGAACTCGTCGCAGTCGCACAGGATGAGGTTCATGTGCTTGTCGAAGGCCTTGAAGGTGCCGATGAAGATGCGCCCGTCCTGCAGGATACAGCGCATCCTGTAGTCGATGTGCTGCAGCATCTTACTGCTCTTCCCCACCGTCTAGGGAGGACAAGACACATCCGGGTCACACACAAACCGGGGCGAAGGAGAAACATCTGAGCCTCAAGGCCTCTCAAAACACGTCCAAAACAACCCAAACCCCACCCCAACAACGAAGGCCTAGTACATGCATTCGAGGAGAATTTACAAGCTTACCAATGCGGAGAAATGCCAAATCACACCCAGGGTCACATTAAAGGTATATTACAGGCTACTACGGAGAGCCATTTTAACGACCCCCACCGTATGCCTAGCTATACCCCGCGTAAACGCAAACAGCGGCAGTGTGTGCGTGCACTGCAGCAGCGTAAAACATTGAGCTTTTACCAAATTTTACAGCAAGAATGAAATATTACTAAagctaattataattaatactcTTTAGAGTTCACTTAAACCAACAATAGTCCAAACAAGGCGTGCTGGCGCATTAATAACGTTACTGTACTAATGCACGTTTATTTTCGTGCGATTAAAAGCCTCCTCGATAATCACAGCCTCGTAGTTCTCCTTAAAGCCATGCGGGCTGAAACACGAGTTACAGCCCGGAACAAACGAGCGGGGTTTGGGACCGGCCTGCTCGCCGGCCAACTTGTCCTcctttttaacaaacacacattctttAACAAACACATCATTCCCAATATCAATAACCCGTCTTTCGAGGAAAAGGGTTCAAAGAGTCTCACCATGATTGCGTTTGTGATGGCTCCGATTCAGATCGGATTatgccaaacaaaaaaaaattgacccGCGGAGCTACTGCGCCGCCAGGACCGTCTTTTAGAGGCAGACAGAGCGGAAGTGTGCGACCGGCGCAGAGACCGGCTAGAAACAAGTGCCACAGCACcgttcctccctccctccacagaCACATAATTTAATCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36861 lncRNA upstream 16259 47613501 ~ 47615931 (+) True G29431
TU36855 lncRNA upstream 25765 47605140 ~ 47606425 (+) True G29425
TU36854 lncRNA upstream 29504 47602218 ~ 47602686 (+) True G29424
TU36853 lncRNA upstream 31089 47600820 ~ 47601101 (+) True G29423
TU36852 lncRNA upstream 32722 47599234 ~ 47599468 (+) True G29422
TU36952 lncRNA downstream 299590 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA downstream 300014 47937390 ~ 47941754 (+) False AMCG00008249
TU37001 lncRNA downstream 499093 48136469 ~ 48136724 (+) True G29546
TU37075 lncRNA downstream 777627 48415003 ~ 48419063 (+) True G29612
TU37081 lncRNA downstream 791599 48428975 ~ 48429218 (+) True G29615
AMCG00008226 mRNA upstream 1101432 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008221 mRNA upstream 1501173 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008220 mRNA upstream 1541197 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008219 mRNA upstream 1563372 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 1720583 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008238 mRNA downstream 76957 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 163722 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008242 mRNA downstream 252606 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008243 mRNA downstream 258542 47895918 ~ 47908312 (+) True AMCG00008243
AMCG00008241 mRNA downstream 278570 47915946 ~ 47918128 (+) True AMCG00008241
TU36851 other upstream 36504 47595104 ~ 47595686 (+) True G29421
TU36848 other upstream 45955 47580213 ~ 47586235 (+) True G29418
TU36777 other upstream 1363863 46267891 ~ 46268327 (+) True G29353
TU36524 other upstream 2191126 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 2288276 45340596 ~ 45343914 (+) False AMCG00008194
TU36882 other downstream 27141 47664517 ~ 47715537 (+) False AMCG00008238
TU36905 other downstream 226193 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other downstream 251651 47889027 ~ 47890683 (+) False AMCG00008242
TU36912 other downstream 276492 47913868 ~ 47916257 (+) False AMCG00008241
TU37226 other downstream 1526440 49163816 ~ 49171017 (+) True AMCG00008263

Expression Profile