RNA id: TU36859


Basic Information

Item Value
RNA id TU36859
length 1787
lncRNA type sense_over
GC content 0.38
exon number 1
gene id AMCG00008233
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47580139 ~ 47607012 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAGGCCATCGATGCTCGCTGATTGATTGGCCAGGGTTTAATTGGCCAATCAATGAAGAGAATTGGCAGAATACAGTTAGCTACAGTAgtgcctcccctcccccttctATATCAGTCACTGTACTGCGTAGCAAATAGCACACCAAGTCAGTCTGTCAATGAATGGTTGGTCTGATGAGGATTAAACAACTTCATGGTAGTTTAAGCAATTACAAGTTTACtctactgtattttattgaattcaGAAATCGGGGAGATATTATATAATCAACAACAAGATAGTTAAATAGGCTTACATGCAcagaaatgttacttttttttaaacatatttagtatatttagATGGAACCTTGTTTAAGCTTGATTCTCCTCTCTTATACCTCatgcaaattataattaattaactactccagaaaacaattacaaagaaGGGGAAGGATACCAGTGACTAATTCTGTAGTTGATTTGCTGGAATAGTTTGGTTGCATAGCCAGTGCTGAAAGCAGCAAAGACTGAGAGAGATAAtgataaaacatgttaaataaacacaaaaacaaaggtaTTCTAACTGTAAAATGCAAGTGGAAACAAAGCTACTTCTTTACAGCTCTGTGATTGGTTGAAGGTGAAATGTAAAACTCTATGCACTaacattaatacatgttttttaagaCATAGctcatttatttgcttttttcagTCAGGAGACCTGGGCCTTTGTTcagttgtttaaaacaaattgcttttttGTGATGTGCGAtcacacaatgtttttgcaAGGAGACTTAAGTCCTATGCGActggtacaaaaaaaaaaactttagcttttttaatgaatgcactGCATGTTCAATGGTCCTATAATCTCATATAATTTTAATGCgtataattattttcagtctGTCAAGGGGGACACATACTGCAGTGGCTTCCAAATTGTTTTCTGCACATGCTATTTGAATCCTTTGCATTTTGACATTACATTCTGGAAATGAACTGAAGCTTATCCAACAGTTTGCTTGACAGTTAGAATCACTATACCGTTTGAAACTACACTGTGCctcttaaatacaaataatccacttacattaatacattaggTGTTAACCTGGGATGGTTGGTAGCTGTTTCTACAGCTACGAGAGAAAAGCACTGAGACACCAGAAAGGGAGCTATACTCCTGTGGAAGACTAGCTGAAACAGActgaaattgaaactgaaaatgagtCTTTGCTAGACTTGCCACTTTCACATTTCAAGCTGTtagaaaatctgtttttcaagTTTCAAGCTTTTAAACCTGTAACAAATGTATACCCATATGCAGAACATAATGTCTGAGTTTCTGCTGCACTTTGGATGGAGTGGTTTCTGGCTTCACTCCCACCTGCACATGGATTTGCTTGGAAGTAGACTGTAGATCCTGTGCATTCCCACAGTTTGCTTTAGTGTGAAAACTGTTTAAGATTGGAAAAGAGTTAACCAGCTGTGACAAGGATGGAGAGGGTGTGAATAGACGTCTAAGGCACAGTTTTCCCTTTCTTCCATTTTTAGTTTTGGCTTGTCCGCTCAACACTTGAACACAGGGGTTGTACTTTGTCAATACCCTTTTCACATGCAGCAAGGAACCAAGATTGTGATTCTCTTGTTGCTGGCAGTTGCTTTCCATGAGCTGAACCCAATCCATGCATCATGAAACTGGGCCTGTCAGCACCTAGCTAATTAAATTGACTGTAACTGCTGGCTAGAATCAAgcctgatttattttcactgtcttAACCATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36839 lncRNA downstream 49629 47530432 ~ 47530659 (-) True G29410
TU36832 lncRNA downstream 170238 47409787 ~ 47410050 (-) True G29403
TU36825 lncRNA downstream 458910 47118637 ~ 47121378 (-) True G29397
TU36811 lncRNA downstream 646020 46931359 ~ 46934268 (-) True G29383
TU36809 lncRNA downstream 676066 46903792 ~ 46904222 (-) True G29381
TU36921 lncRNA upstream 84568 47666642 ~ 47918462 (-) False AMCG00008245
TU36925 lncRNA upstream 84568 47666642 ~ 47918462 (-) False AMCG00008245
TU36924 lncRNA upstream 131860 47713934 ~ 47890683 (-) False AMCG00008245
TU36976 lncRNA upstream 426583 48008657 ~ 48012955 (-) True G29521
TU36985 lncRNA upstream 445643 48027717 ~ 48030913 (-) True G29530
AMCG00008231 mRNA downstream 462788 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008227 mRNA downstream 512089 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008230 mRNA downstream 567011 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008229 mRNA downstream 615716 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008228 mRNA downstream 832730 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008234 mRNA upstream 33779 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008235 mRNA upstream 50256 47632330 ~ 47639937 (-) True AMCG00008235
AMCG00008236 mRNA upstream 60905 47642979 ~ 47676750 (-) True AMCG00008236
AMCG00008237 mRNA upstream 135633 47717707 ~ 47742362 (-) True AMCG00008237
AMCG00008240 mRNA upstream 201227 47783301 ~ 47792521 (-) True AMCG00008240
TU36785 other downstream 1098390 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1525942 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 3162092 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4815634 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5730398 41846933 ~ 41849890 (-) True AMCG00008085
TU36922 other upstream 131860 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 541851 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 699268 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2213897 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2471751 50053825 ~ 50054102 (-) True G29974

Expression Profile