RNA id: AMCG00008236


Basic Information

Item Value
RNA id AMCG00008236
length 2040
RNA type mRNA
GC content 0.58
exon number 21
gene id AMCG00008236
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47642979 ~ 47676750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCTAAACGGCACTGACCTGGTCTATCTCGATGAGCTGGGCATTGGCACCGGGCCACTCGATGGCCACCTTCACGATGTCGGCCGGCGGGGGCATCGCTACACTAACTCAGACCACACTGCGGGGGACAGAAACACCACGGTTACTCTGCTGGAAGAGGACCCAGCACAATCAGTTAAAAGCATCACCAGCCttaatAAGAAGCCTCTTTCCTCCATCATCCGGGAAGTGTGCGATGGCTGGTCTCTGTCGGGCTCGGAGCAGTTTGCTCTGCGCTACGCTGACGGGCCCCAGCTCTACATCACTGAGCAGAGTCGCAGTGAGATCAAGAACGGCACCATTCTTCGCCTGGCCATCTCTCCTGAACTGGCCAAGCTCTCTGCCGACGGCACCTTCGCCACCGAGTTCATTAACATGGAGGGTATTGTGGTTTTTGGGGAGATGCTGGCCTTCACTCTGACAGCCTTCCTGGAGCTGATGGACCACGGCATCGTCTCCTGGGACCTCATCTCGCTGTCCTTCATCAAGcagATCGCTGGCTATGTCAATCAGCCCATGGTGGATGTGTCGATCCTGCAGCGCTCCCTGGCCATCCTGGAGAGCATGGTGCTGAACAGCCACAGCCTCTACCACCGGGAAATCCAGACCTATGCCATCGCCCTCATCAACGCCCTCTTCCTGAAGGCCCCTGAGGACAGGCGCCAGGAGGAGCACACTAACCCCCTGGACCTGCGGCTCACTGAGATGGCAAGCACCCTGGCCCAGAAACACCTGAGATCTATAATTCTGAATCATATAATCCGAGGCAACCGGCCAATCAAAGCAGAGATGGCACACCAGCTGTATGTGCTCCAGGCCCAGAGAGACATCATCTTTGAGTTGCGGAGGATCGCCTTCGACGGAGACAACGACCCCAACAGCAGCACTGAGAAGCGCAAGGCCATGTACACCAAGGACTACAAGATGCTGGGCTTCACGAACCACGTCAATCCAGCCATGGACTTTACCCAGACTCCCCCTGGCATGCTGGCCCTGGACAACATGCTGTACCTCGCCAAGCTGCACCAGGACACCTACATCAGGATTGTCCTGGAGAACAGCAGCCGGGAGGACAAGCACGAGTGCCCGTTCGGCCGCTGTGCCATCGAGCTCACCAGGATGCTGTGTGAGATCCTGCAGGTCGGAGAGTTGCCCAACGAGGGCTGCAATGACTACCACCCCATGTTCTTCACCCATGACCGCGCCTGGGAGGAGTTCTTCTGCGTCTGCGTCCAGCTGCTCAACAAGACCTGGAAAGAGATGAGAGCCACAGCTGAGGATTTCAACAAGgtgaTGCAGGTGGTGAGGGAGCAGATCACTCGTGCTCTGGCCATGAAGCCGTCGTCCCTGGACCAGCTGAAGAGCAAACTGCGCGGCCTGAGCTACACCGAGATCCTGCGGCTGCGCCAGTCAGAGCGGCTCAAACTGCGGGAGCGAATCCAGCCTGAAATCCTGGAGCTGATCAAACAGCAGCGCCTGAACCGGCTGTGTGAGGGGGGCTGCTTCCaGAAGTTCTGGTTTTGCCGGCTGTCTCTGAACCACAAGGTGCTTCACTATGGAGACCTGGAGGAGCTGCCCCAGGGGGAGGTGCCCTTCGAACTGCTCACTGACAAGATCCCGGTGGCTGACATCAAATCAGTGGTGACGGGGAAGGATTGTCCGCACATGAAGGAGAAGAGCGCCCTGAAACAGAACAAGGAGGTGCTGGAGTTGGCCTTTTCAATCCTTCATGACCCTGACGAAGCTCTCAACTTCATTGCACCCAACAAGTATGAGtaCTGTATCTGGACAGACGGCCTATGCGCTTTGCTGGGCAGAGAAATGGGCAGCGACTTGACCCGAAGTGACCTGGACACGCTCATTAGCATGGAGATGAAGCTCCGCCTCCTGGACCTGGAGAACATCACTATCCCAGAGGCCCCGCCCCCTGTACCCAAGGAGCCCAGCACATACAACTTCACCTACCATTATGGCTGAGGGGCAgagtggggttgggggggg

Function

GO: NA

KEGG:

id description
K18985 ELMO2, CED12A; engulfment and cell motility protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36859 lncRNA downstream 60905 47580288 ~ 47582074 (-) False AMCG00008233
TU36839 lncRNA downstream 112320 47530432 ~ 47530659 (-) True G29410
TU36832 lncRNA downstream 232929 47409787 ~ 47410050 (-) True G29403
TU36825 lncRNA downstream 521601 47118637 ~ 47121378 (-) True G29397
TU36811 lncRNA downstream 708711 46931359 ~ 46934268 (-) True G29383
TU36924 lncRNA upstream 37184 47713934 ~ 47890683 (-) False AMCG00008245
TU36976 lncRNA upstream 331907 48008657 ~ 48012955 (-) True G29521
TU36985 lncRNA upstream 350967 48027717 ~ 48030913 (-) True G29530
TU37044 lncRNA upstream 618303 48295053 ~ 48297299 (-) True G29583
TU37057 lncRNA upstream 655358 48332108 ~ 48332942 (-) True G29595
AMCG00008235 mRNA downstream 3042 47632330 ~ 47639937 (-) True AMCG00008235
AMCG00008234 mRNA downstream 23192 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008233 mRNA downstream 35967 47580139 ~ 47607012 (-) True AMCG00008233
AMCG00008231 mRNA downstream 525479 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008227 mRNA downstream 574780 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008237 mRNA upstream 40957 47717707 ~ 47742362 (-) True AMCG00008237
AMCG00008240 mRNA upstream 106551 47783301 ~ 47792521 (-) True AMCG00008240
AMCG00008244 mRNA upstream 205547 47882297 ~ 47887299 (-) True AMCG00008244
AMCG00008245 mRNA upstream 239321 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008254 mRNA upstream 365923 48042673 ~ 48202462 (-) True AMCG00008254
TU36785 other downstream 1161081 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1588633 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 3224783 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4878325 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5793089 41846933 ~ 41849890 (-) True AMCG00008085
TU36922 other upstream 37184 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 447175 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 604592 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2119221 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2377075 50053825 ~ 50054102 (-) True G29974

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007277 False 2140 mRNA 0.48 8 NC_007122.7 88247 ~ 97817 (-)
grasscarp (Ctenopharyngodon idella) CI01000054_06411594_06411984.mRNA True 816 mRNA 0.44 2 CI01000054 6411594 ~ 6412521 (+)