RNA id: AMCG00008237


Basic Information

Item Value
RNA id AMCG00008237
length 5917
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00008237
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47717707 ~ 47742362 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTGCAATCAACCAGTCTGCGGTTTCGTCTCCCTGTACTGGTGGGGGTCCTGGAGGCCATGCTCCTAGCTCTCTATGCTGGCTTTGTGACATATGGTGACAATGCTAATGCAAAGCTGCAGACCAACGAAACCAATCCGATGGACAACACCCTCTACAAGGACTACCCCATGTTCACAGACGTGCAGGTCATGATCTTCATTGGCTTTGGTTGCTTGCTGGCTTTCATGCGTTTCTACGGCTTTGGGGGGATGGTCTTCAACTTCTTGACGGCCACCTTCACCATCCAGTGGGCCATTGTGGCGCAAGGCTTCTTCAACCTCCACCCTGATGGCAAGATCCACCTGGGGGTGATCAACTTGCTCAATGCCGAATTCACCTGTGCTGTGATCCTCATCTCATTCGGGGCTGTCCTGGGCAAGACCAGCCCTGTGCAGCTGCTGGTCATGGCCCTGCTGGAGGTTCCCACATTCGCAGTCACCGAGTGGGCCGTCATAAAGTACCTGAAGATCAATGACGCTGGTGGTTCTATCCTCATCCACATCTTTGCCTGCTACTTCGGCCTGGCTGTCACCAGAGTCATGTACCGTCCAGGCCTGAGCGATGGCCATGCCAAGGAAACCACCAGCTACCAGTCTGATATCCTCTCGATCTTGGGCACCCTCTTCCTATGGGTGTTCTGGCCCACTTTCAACTCTGCCCTGGCACTGCGAGGAGATGACCAGCACAGGGCCATCCTGCATACCTTCATTGCCCTGAGCTCCTCCACGCTCACTGCCTTCGCCTTGTCCGCCCTGCTCAACAAGAAGGGCAAATTGACCATGGCTGATATCCAGAACGTCACCCTAGCCGGGGGGGTGACAGTGGGTGCCTCGGTGGACATGATGATTTCTCCAGCAGCTGCCTTCTCCCTGGGGGTCCTGGGCTGCACGGCCTGCATGCTGGGCTACAAGTACCTCAGCCCCTTCCTGGCCCGCCAGTTCAAGATCCAAGACCAATGTGGCATTCACAATCTCCATGGCTTGACTGGCCTCATCTCCTGTCTGGCCGGGATTGTAGCCATCTTAATGGCCAGTGAGGAGGTGTATGGCCCCAGCCTGTATGAGACTTTCCCTTACCGTGCCCCGGTGGAAAGTGACCCCCATCTGCCTGAGCTTCAAATACTGATCCCAGGGATCAAGGCAGGCGAGGGTCGCAGTTCCCAGGAGCAGGCACTTTACCAGGTGGCAGCCATTGCAGCCACAATTGGGGCATCTGTGGTGGGGGGTGTCCTGACTGGGTTCGTTCTCAAGCTGCCCTGGCTAGCGTCCCCCCCGGATGAGTTCTGCTATGATGATGAGCTGTTCTTTGAAGTCCCTGCAGACTATGACAGCACAAataCAATGGCCAGTCCACGGACAAGACGAGTACTAAAGGAAGTTAGAACTCAAGATGAAAACAATTTGTGTTTCGAGTGTGGAGCATTCAACCCCCAGTGGGTGAGTGTGACTTATGGCATCTGGATTTGCCTGGAATGTTCTGGCAAGCACAGGGGCCTGGGGGTCCATCTCAGCTTTGTGCGCTCGGTGACCATGGACAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCAGGAGGGAACGGCAAGTTCCGCAAGTTCCTGGAGCAGCAGGATGACTACGATGGCTGCTGGACGCTGCAGGAGAAATACAACAGCCGAGCAGCCGCCCTCTTTAGAGATCAGGTTCTTACAATAGCAGAGGGCAAGGTGTGGTCTCTGGAGACATCTCCTGCCAAAGACTGGACCCCACCTCAGCCCAAGACTGGCCTTTCTTCTGCTCACCGAAGCTCAGCTGGACCATCCCAGAACTCGGGCCCCCCCCCAGACAGGGCTTTTGAAGACTGGCTGAGCAATGACATAAATTCCTACCAGGGTGGTGGTGGTTATAGCAATCAGGAGAATCGCTATGTTGGTTTTGGGAACACAGTCACTCCTCAGAAGAAAGAAGACGACTTCTTCAACAATGCAATGACCTCCATTTACTCGGGCTGGAGCAGCTTTACTGTTGGAGCAACCAAGTTCGCAACCGTTGCTAAGGAGAATACAACAAAACTTGCTAACCAGGCAACTCACAAGGTAAAGGATGGCAAATTGTTAGATGAGGTGACTTCTGGCATCACTGAGCTGGCTTCAAAGGTAGGAGGCAGACCTCTGCCACTGTCCACGACAGGAGATAGCTACCAGAACATGGGCTCCACCGAAGGCTACCAAAACAGTGGCCAGGCCAACCCAGATTTCTGGGAAAACTTTGGCAACACCTCCAAGACCAAGAAGTCCCCCAGCACAGACAGCTGGACCATCCCCGACAACAACTCGACCGAGAAGAAGAGCTCTGACAGCTGGGACCAGTGGGCCTCGGAGGGAGCCTCGAATAACCAGCACAGCACCGGGGAGAGCTGGGAGGCCTGGGACAACAACTGGGAGAAGGCCGGCAACGAGGCCAAGGCAAAGAATGCCCCCCCCAAACCAGCTGAGGAGGGCTGGGACAATTCTGGCTGGTAGAGCCACATCTCTACACTCtacaccctcccccccccatTACTTCAGCTGAGCTAAGGGTCTGAGAGAAGTTTACATGGTGCTCGATGGAGTGGTAACTTTGTGCCTCACACTAAAATTACACTATTAGCCCTACTTCACTTTTTAACTGGGGGTGGAGGACATCAGTGCTCAACCTTTCTGCATACAAATGCCTGGTTCTCTATTATTTTTCATAGAATTTGATGGTGCATTTGATTGAAGGAGCACTTAAGTGGACAGTATTGCAATTATTTGTACAGAGTTATTATTCTGTCATTTTGATAAAGCAACGAGATAAATCTATGGAGTACTGAGAGATCTGCAGAGGTGATCAGTATTTAGCCACTTAGAGTAGTAATTCTCTGTCTCCTTCCTTTAGCACCAATAAACTTGTCTCAGAAACCTCAGTCTTAAACTAATGGGTGCACACTGAAAACCCCCTTCATCACCACTCAAGAACAGGAGGTGTCAGAGTGGACAGTCACTTTGCATTCATCTCATCTTCTCGTACTGTACGCTGGCAAAGGTTGTGTATTTATAAAGCGTGGGCAGATGTGTGTCTAAGTAAATCTGTTCTTTATTGGACTGAGAAATCACAGGTTGTGAAAATATACTTGGTATTTGAGGTGGGAGCTGCTTGCTAATGTAGGTTTATCACATTATTGCCTTGAATACGACAGATTCTAGTCATTTGATCATGATAAGtcaattcaaatttgaattccATAAGAGGTGCATTTGGGGAATCGTCGCCAGCCTTTCGAAAGGTATGATTGCCCCCCTGAACTTTGCCTCCTGGACTGAAGTGTATTCACAGGTCAGTGTGGCTGCCAAAGCAGCACATACTCACTGATAAcctcagagagacacagggctGAACGTCTCCAGGTCTTTCACCAACTCTTAAGGATTCAGCAAATTTcaagcatattttaaaaaggattatTTTCATTACTAAACAGCAATTGCTGGCATAGCTCATTAGCAGATAATTTGACCCATCCatatatatctctatttttTTTAGGGGAAATCATTATAgcttccatgttttattttcatgtaatatCCTGCAATTGAATTGGATACTTTTACAGTGTATTCAGTAAGAAAGATAACCATTAAAATACTGAAAGTATCCAGTTCATCTAACACCCACCTCTAGCTGTGGTCAAGGGTGtcagatattttaataaagctgAGAAAAGAAGAGTGTAGAACATCTTATAATGCCAATCCACACCAGGGGGcttactggtttaaaaaaaatcatctgtTTGTCTTACATGCACGGAAAATTAGGACatcatgtacatttatttatcattttgcGTATTGGATAAGAATAATGTTTATagttattatgtttatattgttagatctgatttaattgaattgtatttattttctggttttcCTGTTCTCTCATGTCTGACAGCTGtaaataacactttaaatatcCTTGCACACACGTCTCTACCCCTCAGCTGATGTTGCCATTGAACTTATTTTTGATTGATAGTAAAAAGTGAGAGGGCACTGCATGGTGTTTGTATAATATTAACATGGATATTTCTCTTTAAAAGCAAACTGTATTCTTTGGTAACATCGACTCTGATCgtgaagaaataaatcataCCCATGTAAAACTCGCAGTAACCAAAATAGGGTTTCACGAAGTGTCCTGCTAATGAATGGTAGAGTCTTGTCATGTTTAAAGAAATCCACCTCAATAGCAATCTCTCCACATGCTTCGTAAAATGCTAGTTGGAATTTTGCATTGAACTTCCCTCTGGTGTTTTAGGATTAGTCACATACCTTGGAAATGCAGTTGTATGCAAGTTTGCTTGTGTGTGAgcggatgtgtgtgtgtgtctgttgtacATTACATTGTCAAGAGGGCAGCATTTCAATCAGAAAAGGTTGTCGGATAAAGTTGTGTACGTTTTGAATGTCAGTGTACATTCAGTGCATCAatgaacatttctttaaaacataattgtcattgttttttaagagAAGCACTTTTAGATCCCCTTTTAATCTCTGAAAATCAATTCAAAGTTCACACTGATTCAAGTTGGAAATAGCCAGTTTGTGTGAAGTGCTCATGGAAAGCATATCCTCTGATTTGCAAATGGGACTGGTCACAGCTGGGTGAAGAGCAACTTGGGAGGTGAATGAATGTGGTTGTGTTCTGTAAAATGGATTTGAAGTACAGCATAGGGTGAATCCTTTGCATTACAGCTGCATGTTTTCTAAAATCCAACTTTTGGTGAGAATAGGTCTCAAGtggtggggaagtcttatgatGACTATGATAATAACGCtatgtattgtttgtaaaatgCATCTGTTTTAGGGAATATTTCTCTTTCGTGTCTAGGAATGAATTTAGAAGTTGTATCTATTTTAAGCCTTACAAAGTGTCCAGCCCTGCCtattttttgatgttttgtttgcagAAAATGTTGTGTGACCTTTAACCCTCCTTTCACATTGCCTCTAGTGAACCTCATGGCAAATCTCCAGATTCAAGTGATGAGTACACATCAATCAAACATGTTGGTATTTGACAACTTTTCCGGATCTCGTCTCACAAAGTTCTCTGACTCTAAAACCTGAATATATGTTCAAATTTGCAgaacattttgcattgattttggAAAGTGACATGCAAATACCTGATCGCATTAGTAAGTATCAATCAATAATGCTTCGGGCAAATTAGATGGAGTTTAGATTGACATAAATTCAAGATGTACTGAAGTACCTTTTGACAGGTACTCAACACAacttattttaacaatgtatgttgtaaaatgtcttaTCCTTCCATGCAAGAGCCCTTGGTTTCCAAACTTTGTCTCACACCAATGTCCAAGTGGTTGTAAGTACGGGTTTTCAGTAttcagtcaaaaaaaaaaaattgtagatGTTCGTAGTTTGAaatagtatacattttatttgcccCTACTATCaaaatcttaatttgtttttaaaggaaactgGTTGTTCACCTGGTTTGAAATGTGTAAATCCTTGTGGTCAATTGTCTTTGGTTACGATTTTCTTTAGCTCACTGAAATGGCTTCAATTTCCCCACCAGTCTCACCATTGTATACATTCCAGGGATACTGAGAAATTCTTGTCACTGTGCCGGATTCCTGTGCAATATTTCTtcagcctgttttttttctttttcttattcttccCCACCTCCTTTCACCCTTAAGTTATACAGGGCACACAATAGGTGTTCCACAATGTGTACAAGATAATGGTCTTGGATTTGTTCCTGTGTATTATCTCATgtttcaaaaaacaaatcttaataaaGCAGAAGAAAAGA

Function

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function
GO:0015379 potassium molecular_function

KEGG:

id description
K12492 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36859 lncRNA downstream 135633 47580288 ~ 47582074 (-) False AMCG00008233
TU36839 lncRNA downstream 187048 47530432 ~ 47530659 (-) True G29410
TU36832 lncRNA downstream 307657 47409787 ~ 47410050 (-) True G29403
TU36825 lncRNA downstream 596329 47118637 ~ 47121378 (-) True G29397
TU36811 lncRNA downstream 783439 46931359 ~ 46934268 (-) True G29383
TU36976 lncRNA upstream 266295 48008657 ~ 48012955 (-) True G29521
TU36985 lncRNA upstream 285355 48027717 ~ 48030913 (-) True G29530
TU37044 lncRNA upstream 552691 48295053 ~ 48297299 (-) True G29583
TU37057 lncRNA upstream 589746 48332108 ~ 48332942 (-) True G29595
TU37077 lncRNA upstream 672641 48415003 ~ 48418903 (-) False AMCG00008255
AMCG00008236 mRNA downstream 40957 47642979 ~ 47676750 (-) True AMCG00008236
AMCG00008235 mRNA downstream 77770 47632330 ~ 47639937 (-) True AMCG00008235
AMCG00008234 mRNA downstream 97920 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008233 mRNA downstream 110695 47580139 ~ 47607012 (-) True AMCG00008233
AMCG00008231 mRNA downstream 600207 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008240 mRNA upstream 40939 47783301 ~ 47792521 (-) True AMCG00008240
AMCG00008244 mRNA upstream 139935 47882297 ~ 47887299 (-) True AMCG00008244
AMCG00008245 mRNA upstream 173709 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008254 mRNA upstream 300311 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008256 mRNA upstream 460259 48202621 ~ 48291443 (-) True AMCG00008256
TU36785 other downstream 1235809 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1663361 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 3299511 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4953053 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5867817 41846933 ~ 41849890 (-) True AMCG00008085
TU36999 other upstream 381563 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 538980 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2053609 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2311463 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 2531376 50273738 ~ 50274183 (-) True G30054

Expression Profile