RNA id: TU36912



Basic Information


Item Value
RNA id TU36912
length 526
RNA type TUCP
GC content 0.56
exon number 2
gene id AMCG00008241
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47913868 ~ 47918128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGACTGTTACCAAGGTAAACACAAAGCTCGGCTGTGATTGGCTGCGCTTTTACCAGATGGTTCTGGAACGGCAGAGAGCAGATATAAGCAGCAGGCTGGGCTTAGGCTGCAGGAGCGGTTCAGCGACGCACGCTGTCGCAGAGAGGAGAGACCTCATTGAGACCGTcactgcagcagcacagcactACAGGATAGATACACAGCTACTGGCAAGATGTCTGCACCTAAGGGAGTTTCTATTGGGATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCCTTCACGGACACAGAGAGGCTGATTGGAGACGCTGCCAAGAACCAGGTGGCCATGAACCCCAACAACACCATCTTTGATGCCAAGCGCCTGATTGGCAGGAAGTACGATGACTTGGTGGTGCAGGCTGATATGAAGCACTGGCCCTTCAAGGTGATCAGCGATGGAGGGAAGCCCNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36861 lncRNA upstream 297937 47613501 ~ 47615931 (+) True G29431
TU36855 lncRNA upstream 307443 47605140 ~ 47606425 (+) True G29425
TU36854 lncRNA upstream 311182 47602218 ~ 47602686 (+) True G29424
TU36853 lncRNA upstream 312767 47600820 ~ 47601101 (+) True G29423
TU36852 lncRNA upstream 314400 47599234 ~ 47599468 (+) True G29422
TU36952 lncRNA downstream 20709 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA downstream 21133 47937390 ~ 47941754 (+) False AMCG00008249
TU37001 lncRNA downstream 220212 48136469 ~ 48136724 (+) True G29546
TU37075 lncRNA downstream 498746 48415003 ~ 48419063 (+) True G29612
TU37081 lncRNA downstream 512718 48428975 ~ 48429218 (+) True G29615
AMCG00008243 mRNA upstream 5556 47895918 ~ 47908312 (+) True AMCG00008243
AMCG00008242 mRNA upstream 21797 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008239 mRNA upstream 100778 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008238 mRNA upstream 197286 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008232 mRNA upstream 280217 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008249 mRNA downstream 13410 47929667 ~ 47939861 (+) False AMCG00008249
AMCG00008248 mRNA downstream 38777 47955034 ~ 48001940 (+) True AMCG00008248
AMCG00008247 mRNA downstream 98843 48015100 ~ 48030729 (+) True AMCG00008247
AMCG00008246 mRNA downstream 126489 48042746 ~ 48067543 (+) True AMCG00008246
AMCG00008251 mRNA downstream 319430 48235687 ~ 48275348 (+) True AMCG00008251
TU36905 other upstream 23185 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 23185 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 198331 47664517 ~ 47715537 (+) False AMCG00008238
TU36868 other upstream 242447 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other upstream 276492 47632190 ~ 47637376 (+) True AMCG00008232
TU37226 other downstream 1247559 49163816 ~ 49171017 (+) True AMCG00008263
TU37330 other downstream 1488599 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 2435270 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 3510324 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 4184505 52100762 ~ 52101524 (+) True G30232

Expression Profile