RNA id: AMCG00008244


Basic Information

Item Value
RNA id AMCG00008244
length 1831
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00008244
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47882297 ~ 47887299 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGACGGCAGAGCCTTGGCTGTTGGCTGCCCCAACTTGATTATATCCGGTCTGTTTTAGTTAGACGTAGACGTAATTTGAAATTCATTCCTACTACTACTGAAATCacattgtaattaatatttagTACTTTTGCGTCTTGTGATTTTGTGACTCATGATGTGCTTCATTGTTTCGAGATTGCGTACATACGGAAGTTAAATCGGATTTTCACCCAGGCTCAGAGGAGTGCCGGTTTCTGTGTTGAACTGCCAGAGGGAAGCGCTCCCTCTTCTGTCAGTTTGGGACCCTAATCTCCACTTCACCGCAGTGTGGCAATGGCGAGTCACTTCCGCAGCTACATCTGGGACCCTGTCCTCATCGTGTCTCAGATTGTGCTAATGCAGTGTATCTACTACAGCTTTCTGGGGTTGTGGCTGGCTGGAGTGGACAGTCTGGTGCAGAACAGCCGTTCACTGGATCAGATCTTCAGCTATGAGGTTCTTGGATTCTCTACCCCTCAGGGGCGGCTTTCAATGATGGCATTCATCCTCAACTCCCTCACATGTGCACTGGGCCTGTGGTTCTTCATCCGCCGTGGGAAACAGTGCCTGGACTTCACCGTGACTGTCCACTTCTTCCACCTGATTGGCTGCTGGATATACAATACCCACCTCCCTGCCGCCTTGTCCTGGTGGCTGGTGAACATGGCCTGCATGGCTCTGATGGCGGTGATCGGGGAGTACTTGTGCATGCGGACTGAACTGCGCGCCATCCCTGTCAATACCGGGCCCAAGTCCAATCTCTGATTCCCACCTGCACTTCTTCCACTTCTGCCTGGAGAACGGGGATCCTTAACCTCCCAAGAGACAATTCAATATTGCCAGAGCTGCTCCACAGCCACCCACAGGCTCGGATGAACGACATGCGTGGGCACAAACTCCGAGGCGGTGAGAGGTTCGTTTGCCCCACTGCCTCGTCAGTTGGCACTGACCTAAGGCATCTTAAATCAAACCAGGTATTCCAAGGTTAGCCTGCCACCCTTcggtttctgtttatttattttttagtttaagACTTTCAGCACATTTTCATGTACCTGCCTCAACTATCAGAGTGTGGGATTTATAGCCTGTCCACCTCCATGTTTAACACTCTTTTGTGTTCATCTGAGGAGGTGGAGTGTTGAATTTAGggattttacttaatttctACAGCCTCAGTGAAGCAGAGTTGGTGGATGACAGTTGAACCACATAATCATGGGATACTATGGGATACTATGGTATACAGATTATTTCTTACTGAGTATGAACTGTTCCCCCCTTGTTTTTAGTCAGGGTAACCAAATATatctaatttattgtatttggaTTCACAATTCACTGGAGCACTGGGACCTTTTTATAAAGCTCCAAGAAGAAATCCCATGCTTTAATCTTTTATTACAGGCAGGCTTTgatcaacaaattaatttgtttggcaGAGTGAGGATGAATCAAGAATGGCAGTTCAGCGGTAAGGACAGTTTATAACTCTGCCACATTTAAAGAGCGATTATGAATTAGACTATATCCTTATGCTGACTGCAGTAATTTTTTGGTAGGATCTCtctcccttgttttttttttactttaataatgtgaaataaagaaaaagacaaacaagtTTGAAACAAATCTTTCAAAGTAGTcctcaaaaaaatattaattaaaaaaaaaagacagctttTATCATTGAAACAGAGTGACTCTGAAGGGAGTTTCTAGTGAGTAAGATGACGTCCTACAGACATCAGTTTACTCCTTTTCTGCTCCAGGGATGAGTGTGTTCTCTGTATTGTAAGAAGAT

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component

KEGG:

id description
K20318 SYS1; protein SYS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36859 lncRNA downstream 300223 47580288 ~ 47582074 (-) False AMCG00008233
TU36839 lncRNA downstream 351638 47530432 ~ 47530659 (-) True G29410
TU36832 lncRNA downstream 472247 47409787 ~ 47410050 (-) True G29403
TU36825 lncRNA downstream 760919 47118637 ~ 47121378 (-) True G29397
TU36811 lncRNA downstream 948029 46931359 ~ 46934268 (-) True G29383
TU36976 lncRNA upstream 121358 48008657 ~ 48012955 (-) True G29521
TU36985 lncRNA upstream 140418 48027717 ~ 48030913 (-) True G29530
TU37044 lncRNA upstream 407754 48295053 ~ 48297299 (-) True G29583
TU37057 lncRNA upstream 444809 48332108 ~ 48332942 (-) True G29595
TU37077 lncRNA upstream 527704 48415003 ~ 48418903 (-) False AMCG00008255
AMCG00008240 mRNA downstream 89776 47783301 ~ 47792521 (-) True AMCG00008240
AMCG00008237 mRNA downstream 139935 47717707 ~ 47742362 (-) True AMCG00008237
AMCG00008236 mRNA downstream 205547 47642979 ~ 47676750 (-) True AMCG00008236
AMCG00008235 mRNA downstream 242360 47632330 ~ 47639937 (-) True AMCG00008235
AMCG00008234 mRNA downstream 262510 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008245 mRNA upstream 28772 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008254 mRNA upstream 155374 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008256 mRNA upstream 315322 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008255 mRNA upstream 523786 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008258 mRNA upstream 597096 48484395 ~ 48643942 (-) True AMCG00008258
TU36785 other downstream 1400399 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1827951 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 3464101 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 5117643 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 6032407 41846933 ~ 41849890 (-) True AMCG00008085
TU36999 other upstream 236626 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 394043 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 1908672 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2166526 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 2386439 50273738 ~ 50274183 (-) True G30054

Expression Profile