RNA id: TU36925


Basic Information

Item Value
RNA id TU36925
length 2362
lncRNA type read_through
GC content 0.54
exon number 3
gene id AMCG00008245
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47666642 ~ 47918462 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTATTATACTGAACTTTGGCATTTATATCAAGACTGGTTGTCGCACACATTTTCATTAGaacagtgaaaatattaaagagAGATCATTTGTAATGGCCTTGGTCCATGTTAAACATTTCACCAACACAACATGCAGTGTAGATATTattcaagaaaatataattggcaggaataaacattttgcattaaacaaatctctttaaacatttatttacattctgCTCATAATTTAGTTCAACCACAGAACACTCCATTTCATACTGACACAAGCTCTACCAATCCACCCTCCTTGGTTCAGTGACTCCAGTGCCTGGCCTACAGCCAAATCAACTTAATCCACCTCCTCAATGGTGGGCCCTGGCCCTGAGCCTGCCTGTGTCTGGCTTCCTCCAGGCATGCCTCCGGGCATTCCTCCTGGCATCCCTCCCTGGTACAGCTTGGTGATGATGGGGTTACACACTTTCTCCAGCTCTTTCAGCTGGTGCTCGTACTCATCCTTCTCTGCCAGCTGGTTTGACTCCAGCCAGGATATGGCCTGGCTGCACTTCTCAATCACCACCACCTTGTCGGCCTCGCTGATTTTGCCTTTCAGCTTCTCATCCTCCATGGTGCTCTTCATGTTCAAAGCGTAGGACTCCAGGGAGTTCTTGGCAGCGATCTTCTCCCTCTGGGCATCATCCTCTGCTTTGTACCTGTCAGCATCCTGCACCATCCTCTCAATCTCCTCTTTGCTCAGCCGGCCCTTGTCGTTGGTGATGGTAATCTTGTTCTCTTTTCCGGTGCTCTTGTCCACCGCTGAAACATTCAGGATGCCATTGGCATCGATGTCGAAGGTCACCTCGATCTGTGGCACGCCTCGGGGGGCAGGGGGGATGCCCGTCAGCTCAAACTTGCCCAGAAGGTTGTTGTCCTTGGTCATGGCCCTTTCTCCTTCGAACACCTGGATCAGGACTCCGGGCTGGTTGTCCGAGTAAGTGGTGAAGGTCTGCGTTTGCTTGGTGGGGATGGTCGTGTTGCGTTTGATCAGGGCAGTCATGACTCCTCCTGCAGTCTCGATGCCCAAGGACAGTGGGGCCACATCCAGCAGCAGCAAGTCCTGCACATTCTCAGAGGTGTCGCCCATGAGGATGGCTGCCTGGACAGCCGCACCGTAGGCCACGGCCTCGTCAGGGTTGATGCTCTTGTTCAGTTCCCTGCCGTTGAAGNNNNCCTGCAGCAGCTTCTGGATCTTGGGGATACGAGTGGAGCCTCCCACCAGTACGATGTCGTGGATCTGAGCCTTGTCCATCTTGGCGTCCCTCAGCGCCTTCTCCACTGGCTCCAGTGTCCCTCTGAAAAGGTCCGAGTTCATCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTAGAAATCGATGCCTTCGTACAGAGAGTCAATCTCAATGCTGGCCTGGGAGCTGGAGGACAGGGTCCTCTTGGCCCTCTCGCACGCTGTGCGCAGCCTCCGCAGCGCCCTCTTGTTCTGACTGATGTCCTTCTTGTATTTCCTCTTGAACTCCTCCACAAAGTGGTTGACCATGCGGTTGTCAAAGTCCTCCCCGCCCAGGTGAGTGTCCCCTGCGGTGGCCTTCACCTCAAAGATGCCATCCTCGATGGTCAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCAAAGATCAAGACGTTGCGCTCTCCTCTCTTGCCCTTGTCCAGCCCGTAGGCGATGGCGGCCGCTGTGGGCTCGTTGATGATTCTCAGCACGTTCAGGCCTGCGATCACTCCGGCATCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGATGACGGCGTTGGACACTTTCTGGCCCAGGTACGCCTCCGTAATCTCTTTCATCTTGGTCAGCACCATGGAGGAGATCTCCTCTGGGTAGAAGGTCTTATTCTCTCCTTTGTAGTCCACCTCCACCTTGGGCTTCCCTCCATCGCTGATCACCTTGAAGGGCCAGTGCTTCATATCAGCCTGTACCACCGAGTCGTCATACTTTCTGCCAATCAGGCGCTTGGCATCAAAGATGGTGTTGTTGGGGTTCATGGCCACCTGGTTCTTGGCAGCGTCTCCAATCAGCCTCTCCGAGTCCGTGAAGGCCACGTAGCTGGGGGTGGTCCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAACACCCCCACACAGGAGTAGGTGGTGCCCAGGTCGATCCCAATAGAAACTCCCTTGGGTGCAGACATCTTGCCAGTAGCCGTGTTTGTctctctctctctctctctctttctttgtctGCCATGTACATTTCAGGGAATACATGGGCAAAGTGcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36859 lncRNA downstream 84568 47580288 ~ 47582074 (-) False AMCG00008233
TU36839 lncRNA downstream 135983 47530432 ~ 47530659 (-) True G29410
TU36832 lncRNA downstream 256592 47409787 ~ 47410050 (-) True G29403
TU36825 lncRNA downstream 545264 47118637 ~ 47121378 (-) True G29397
TU36811 lncRNA downstream 732374 46931359 ~ 46934268 (-) True G29383
TU36976 lncRNA upstream 90195 48008657 ~ 48012955 (-) True G29521
TU36985 lncRNA upstream 109255 48027717 ~ 48030913 (-) True G29530
TU37044 lncRNA upstream 376591 48295053 ~ 48297299 (-) True G29583
TU37057 lncRNA upstream 413646 48332108 ~ 48332942 (-) True G29595
TU37077 lncRNA upstream 496541 48415003 ~ 48418903 (-) False AMCG00008255
AMCG00008235 mRNA downstream 26705 47632330 ~ 47639937 (-) True AMCG00008235
AMCG00008234 mRNA downstream 46855 47615853 ~ 47619787 (-) True AMCG00008234
AMCG00008233 mRNA downstream 59630 47580139 ~ 47607012 (-) True AMCG00008233
AMCG00008231 mRNA downstream 549142 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008227 mRNA downstream 598443 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008254 mRNA upstream 124211 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008256 mRNA upstream 284159 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008255 mRNA upstream 492623 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008258 mRNA upstream 565933 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008257 mRNA upstream 756066 48674528 ~ 48697834 (-) True AMCG00008257
TU36785 other downstream 1184744 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1612296 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 3248446 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4901988 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5816752 41846933 ~ 41849890 (-) True AMCG00008085
TU36999 other upstream 205463 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 362880 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 1877509 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2135363 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 2355276 50273738 ~ 50274183 (-) True G30054

Expression Profile