RNA id: AMCG00008246


Basic Information

Item Value
RNA id AMCG00008246
length 4457
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00008246
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48042746 ~ 48067543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCGCACCTGGGGAAAGGATCTGAAAAGCATTGAAACTATGTTTCAGCTTCCAGTCAATAACCTTGGCAGTTTAcgaaaggcccggaagaccgtGAAGAAGGTTTTGAGTGACATCGGCTTGGAATACTGCAAGGAGCACCTTGAAGATTTCAAAGAGTTCTGTCCTAATGATTTCTATGTGAAGAACACAACCTGGGAGGATGTTGGTTTATGGGATCCATCTTCAACAAAATCTCAGgATTACAGGTCAAAGCCATTCTGCTGCACAGGCTGTCCCTTCTCTTCCAAGTTTTTCTCTGCCTACAAGAGCCACTTTCGCAATGTGCACAGTGAAGATTTTGAAAGCAGAATCTTGCTGAACTGCCCTTACTGCACttacaatggaaataaaaagacTTTGGAAACGCACATAAAGCTTTTTCATGTCCCGCAAACAAACCATTTGGTCCGAGGTCCCGGTGCATTGAAAGAGGCATCCCGCCTTGATAGTAACCATAAACCAAAGCAGGCTGACAGTGTAGAGCAGGCTGTGTATTACTGTAAGAAATGCACCTACAGAGACCCACTTTACAATGTTGTTCGCAAACACATTTATAGGGAACATTTCCAGCATGTGGCAGCACCTTACATTGTCAAGACCACGGACAAATCTTTGAACGGTGCCGTTAACCCGAGTGCGGCTGCCCGTGATGAAGGAAACATGCATTGTAAACGATGTTTGTTCATGCCAAAGTCCTATGAGGCTTTAGTTCAGCATGTTATTGAAGACCATGAACGCATAGGCTACCAGGTAACAGCCATGATCGGTCATACGAATGTGGTGGTGCCAAGGTCAAAGCCTTTGATGCTGTTGTCTCCAAAACCACAAGACAAGAGCCTTTTGGGTTTGTCTCAGAAAGGCACGGTTGCAGCTAATATTCGATCCCTTTCATCACAGCAAATGATGAGTCGGTTAGCTATACCTAAACCAGGACTGAATTCTGCAGCCATTCTGGCAAATGTGCACATAAAGCAAAACCCTTATGGATTAAAGAACATTCCACAGGGTTATTCTCTTGGACAGCAAATGAGGATTCCTATGCCAGGGAATGCACAGGTGTCTATTCCTCAGCAATCTCACACTGTAAAACAGCACATACCTGGGGGCAATGTTCGCAATTCCACAGCTGGGGCATTGGAGCCCAGAACTCAGGCTCCTTCCAGGCTCAATTTACAGTCAGGAAACTCTGTAAGTAGTAACTTGACATCTTCTGCCATGAAGCCTACACAGTTGCCATCTAGAGTACAGTCTGCGGCCGCTATCGCAGCAGCCACTAAGGTGGTTAACTCAGCAAATGCTGGAACTTCCTACACACAGAAGTGGAAGATCTGCACCATCTGCAACGAGTTGTTTCCTGAAAACGTCTACAGCGCTCACTTTGAAAAAGAGCACAAAGCTGAGAAGGTGCCTGCAGTGgcaaactacatcatgaagattcATAATTTTACTAGCAAGTGTCTTTACTGCAACCGATACTTGCCCAGTGACACGCTACTCAATCACATGTTGATTCATGGCCTGTCTTGTCCACACTGCCGCTCCACTTTCAATGACGTGGAGAAGATGGTTGCACACATGCGGCTGGTTCATCCAGATGAAGTGATGGGACCACGTACTGATTCGCCGCTTACTTTTGACCTTACTTTGCAACAGAGCAATCCTAAAAACATACAGCTCATTGTAACCACATACAACATGCGGGATGCCCCTGAGGAATCAGTGGCCTTCCATGCACAGAATAATAATGCATCAGTGCAGTGCAAGAAAATACCACCTAAAATGCCAGAAAGCCATGAAGCTCCTGTAAAAAGTGCCCCTCAGACTGCAGTCCCATACAAAAAAGATGTAGGTAAAACCCTCTGTCCTTTGTGTTTCTCCATTCTGAAAGGGCCAATCTCAGATGCTCTAGCTCACCacttgagagagagacaccaagTCATTCAGACTGTCCATCCTGTTGAAAAGAAACTGACTTACAAGTGCATTCATTGTCTAGGTGTATATACTAGTAATATGACCGCTTCTACTATAACTTTGCACCTTGTTCACTGCAGAGGTGTAGGCAAAACACAGAATGGGCAAGAGAAGGCCAGTGCACCCCCAAGAGTATCCCAGTCGCAAGCAGGAGCTCCTCTCAAGCGAGAACTTGAACATTCGGATCCagggtttttaaaaaaaagaaaaatggaccGAGAATATAATCCGTCACCATTCGTAGAGAAGCCAGAAGAGCCAGTTGTTTTAGCATTGGACCCTAATGGTCATGAGGATGATTCTTATGAGGCCAGAAAGGCTTTCCTCACAGAGTACTTCAATAAGAAACCTTACCCTTCCAGAAGAGAGATTGAGAAGCTGGCTGCTAGCTTGTGGTTATGGAAGTCTGACATTTCAAGCCATTTCACCAACAGGAGGAGGAAGTGTGTCCGGGACTGTGAGATAAAAAAAACGGCTGTGCTTTTAGGTTTTAACATGAGGGAAGTCAACAAGCTTAAACATGACATGGATTTTGATCCAGAATGGTTTTTCGAGGGCAAAGATGAAGAGGAAAGTCGGACATCCAAAACCTACACGGCACGGTCAGCGGATTCAATCAACAGGCGTCTAGAGGAAAATGCAGCTGCCCGTCTCCAAGAAGCCTCAAATTTAGCCAAAGCCACAGTAATACCTGTCTCCACAAAGTCCACTCCAGGAGAAAGCAGTCCTCCACAAAATTTGGAAATCAGCCAAAGTGAGACAATCATAAGCACCTTACAAACTGAAAAGAGCTCGGACTCTATAGCCGAGGGATCAGAGAGTGGGTGGGATGAGGAGGAAGATGGAGAGCAGGCACTGTGTAAAGATGACAGTGCCTCAGAAGATGATCAGGAGGAAGTGCAAGGGAAAGAGCCTCCTGTGGTCGATGTAGAAGATGAGCCAAGTCGAGAGAATCGGAGTCCTGGGATGAGAGACTGTGATGGATTGAAAGAGGGTGGCGAGCAGCACGACACAGACATGTTATGTAAGTTGGATAAAGAAGATACCGAATCAAGAAATGCCGACAGTTCTGAGGATGAGCTGAAGGACAGTTACGACTTGGAGGATGAACCTCACAAAATCACAAAGGAAGGAGAAGCTGAAGAAGACCCAAAAGATGGAGCCTCCCGTTTAGATAGCGATCCTGGTTCACAGCCTGCCTCCGATTTTGAGGATGGTCCATGGAATGAGGAAAATTCCCAGAGTGAGAATGGCTATCAAGGGAAGCAGCAGCCAGTGACGGAGAAGGGGGATTTTGAGAAGAGTTGGCCCAAAGATCCCTCATCAGTGTGGAAAATGAGCTCAACTGATGAGGAAAGCCTTTCCAACCCTCCTCTTGACTGGCAGAACAGTGCTGCAGACAGTGAGGGTGAAGACAGGTTAGATAATATGCTGGAACAATCGAACGACAGCATGTCGGAGAACTCGGACCCTGTGCACAGTTTACTATCGGGTGTTGGACTGAGCAGTCAGGAAGCGTAATTCAGTTATTACCTACAATAGCGTTTCTGAAGAAATATCTTGGGGGTTTCACTTACCAAGCTATCCAAAAAGGCCAATTTAGCtgctttgtattatattgtcCTACAGTGGCAggaaaacgaaacaaaacaaaaacttctaAAATATCcttggaaagagaaaaaaaaagttgtgtaaATTGCACCTATGGTACAAAAAATGCCTTCATTTTACTTTACCTTATGTATTCATCTATTTACTTATTGAAATGATGTATTTGCCTCTAGATTTTGGCAAAGTTGTGACTGGTTAAATTAGatttggaagatttttttttttcgtataGTCATTCAATAtagttattgtatatttgtacagtCTTTTAGAACTATACTGAGGAAGCTTATCATTGCTTTTGtgtattcattatatatttgcTATTTTTCTTGTGCACATGCTATGTAATAAATACTACATTAGTCAACTTACGTTATGGCTAGAAAGTGATGTAGTGACTGTTGGGGTTTTGAACAACATAGTAttttgcaaaacataaaaaagccaattAAAGGAACATACTCCCTGGGCTTTTCACAGTACAGGACCTAATTTTTGTTACTTGCCACTGCTCTTGACAGAAGACTTCTTCAGTTAtccaattattttttccaatgttatctcaaaatcacaaaaaactaaaaaaaagttgaatatTCCATAGATATGTACTTTGTAGTATACGGTGTTGAATGCAGCCATCACAGACTGCTGCATCTTgaatagtttttctttctaGAGGATTGACACCTTTTGGTGTTGTAAACATGATATCATAATATATgactcactgtatgtatgttaaTTTGTGACCTTTTATTTCcctttgtatttttcatttaagcatttctgaaaaataaagtgctgtATTGTGCTTCGCA

Function

GO: NA

KEGG:

id description
K22591 ADNP; activity-dependent neuroprotector homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36952 lncRNA upstream 100992 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA upstream 100992 47937390 ~ 47941754 (+) False AMCG00008249
TU36861 lncRNA upstream 426815 47613501 ~ 47615931 (+) True G29431
TU36855 lncRNA upstream 436321 47605140 ~ 47606425 (+) True G29425
TU36854 lncRNA upstream 440060 47602218 ~ 47602686 (+) True G29424
TU37001 lncRNA downstream 68926 48136469 ~ 48136724 (+) True G29546
TU37075 lncRNA downstream 347460 48415003 ~ 48419063 (+) True G29612
TU37081 lncRNA downstream 361432 48428975 ~ 48429218 (+) True G29615
TU37131 lncRNA downstream 606705 48674248 ~ 48676139 (+) True G29661
TU37145 lncRNA downstream 694429 48761972 ~ 48762297 (+) True G29675
AMCG00008247 mRNA upstream 12017 48015100 ~ 48030729 (+) True AMCG00008247
AMCG00008248 mRNA upstream 40806 47955034 ~ 48001940 (+) True AMCG00008248
AMCG00008249 mRNA upstream 102885 47929667 ~ 47939861 (+) False AMCG00008249
AMCG00008241 mRNA upstream 124618 47915946 ~ 47918128 (+) True AMCG00008241
AMCG00008243 mRNA upstream 134434 47895918 ~ 47908312 (+) True AMCG00008243
AMCG00008251 mRNA downstream 168144 48235687 ~ 48275348 (+) True AMCG00008251
AMCG00008252 mRNA downstream 225096 48292639 ~ 48326138 (+) True AMCG00008252
AMCG00008253 mRNA downstream 280204 48347747 ~ 48376071 (+) True AMCG00008253
AMCG00008250 mRNA downstream 394750 48462293 ~ 48474532 (+) True AMCG00008250
AMCG00008262 mRNA downstream 856321 48923864 ~ 48940095 (+) True AMCG00008262
TU36912 other upstream 126489 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 152063 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 152063 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 327209 47664517 ~ 47715537 (+) False AMCG00008238
TU36872 other upstream 405370 47632190 ~ 47637376 (+) True AMCG00008232
TU37226 other downstream 1096273 49163816 ~ 49171017 (+) True AMCG00008263
TU37330 other downstream 1337313 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 2283984 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 3359038 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 4033219 52100762 ~ 52101524 (+) True G30232

Expression Profile