RNA id: AMCG00008248


Basic Information

Item Value
RNA id AMCG00008248
length 3974
RNA type mRNA
GC content 0.53
exon number 35
gene id AMCG00008248
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47955034 ~ 48001940 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGCTCAAACTGACGGTGCTGTCTGAAGACCGGCTACAGATGAAATGGAAGGAGGCCGAGGGGCCCGTTCAAGGGTATAAGGTCCGAGTCAAGCCTATATCAGTTGACAGTCTGAGGGAGGAGTCTAAAAACCGTAGTGGAAGCAGAGAACAAAAGAAGAAGGCCCTGGATGACTCTGAAGAAATTGCTGCAGACAACTCCACCCAGGCGCCCCAGTCTGCCAACACTGTCGAGGAGGAATCTGCACAGATGGACATAGTCCCTAGAAACAAGACTTCGGGAGAGAACAGTTCCAAAGGCAGGAAGAAGGGACGCTCCAAAACTCCCAGCACAAATGAGAAGCAGACCcgcaaaaaaactgaaaaagaaaactccagcaaagaaaaaccaacaaagacagtctccacacaggcagagacaGCGAGGAGAATGTTTGCATGCGAGACCGCAGCCCCGGCGGACATTGTGTTCCTGGTCGATGGGTCCTGGAGTATTGGAAGGAGCAACTTCAAACGTGTGCGTGACTTCCTGGAGAACGTCATGATTCCCTTCAACATCGCAAGTGACAGCATAAGGATTGCGTTGTCGCAGTACAGTGGAGATCCACGCACAGAGTGGAACCTGAATAATTTCACCACCAAAGAGCAGCTCGTAGAAGCTGTGAGGAACTTTCGATACAAGGGAGGCAACACGTTCACAGGCCAGGCTTTGATGCATGTCTTGGAGGAGAATCTGAAAGAGGAGTCAGGAGCCCGGCTGGACTCACCCCAGTTTGTTGTACTTCTTACTGACGGCAAGTCCCAAGATGACGCCATCATCTCAGCACAGAAACTGAAGGATGCTGGTGTTGAGATCATCGCTGTGGGGGTGAAGAATGCAGATGAGGCAGAGCTGAAGCAGATCGCCTCGAAGCCCATTGAGCTCAGCGTCTTCAATGTCAACGACTTCCCTCTGCTCAGCAGGCTGGTGGACAGACTGAGCCGCATTTTGTGTGGGAAGATTGAAGACAAGAGCAAAGCTAAGAGACTGGAGAAGCCTACCCAGCCTGCGGTGGAGACAGACACTGGGCCCACAAACCTGGCCTTCTTTGAGGTGAATTCCAGGGACTTCAAAGTGAGCTGGAGTCCGCCCCCCCAGCCCGTGCACAGATATAGGGTTGTCTATCACAGTGCAGAGGGAGGGAGCCCCCAGGAGACTGAGTACCATGTCTCGATCTTCCCTGTTTACGAGAGAAATGTTGGCACTGGCCTGCGGGGGACTGTGACCACATTGCCGCTGGCGCCGCCCCAGTACCTCCAGATCTACTCCACCACGCACAACAGCCTGCGGGTGAAGTTTGGTCCAGAAAAGACAGACGTTGAGCTTGCTGGTTTGCTGCCCTCGACGGACTACTCTGTCACAGTGTATGCTCTCTATGATGAAGACCCCAGCGACCCCATCACCGCCATGGCGAGAACAAAGCCCCTCAGCCCTCCTCTCAGCCTACAGTTTCCCCAGATCAGCCACAGCACTGTGAGAGTGAGCTGGATTCCTGCCTCAGACAGAGTCCCCAGGCACCGACTCACCTACAGTACAAACCACGGCAGTGATGTCAAGCATGTAGAGGTTGAGGAAACAACATCCTTCCTGCTTCGGAATCTCTCCTCCTTATCAAACTATATTGTGGCCATCTGCTCTGTCTACGATGAGGGACTTTCTACTCTGATAACTGGCAATGTCACAACTTTGAAGGTGCCCTCCCCTTCCGAGCTGAGAGTTGCTAATTTCTCTGGGAGAGACATCATGGTGGAGTGGAAGTCTGCGGCCGATGATGTTGTCTCTTACCTCATCAAATGGATTTCACTCAGCGGTGGAAAGCTGAACCAGCTCACAGTCAGTGGAGTCAGTGAGTCTGCCGTGCTGGAGAGAGTGGAGAATAATGATGAATaccagatctctctctctgcactgtaCGCCGACGGGGCGCAGAGCGAGGCAGTGGCCATTCGCTACAGCACCTTTTCTGGAGGTGGCCCTTCCAACTTAGTGATAGATGAGGAGGCAGTGAACAGCCTGCTGGTGAGATGGGATCACCCTAACGCCCATGTTTCCCAGTACCGTGTACACTACACTGCGATGAGAGGTGAACCTGATGAGCAGACTGTATCTGTCCCTGGGAGAGAGAACAGCGTCCGACTGAAATCTCTGCTCCCAGACACCAAGTACAGTGTAGTGGTCACTGCAGTGTACAGAAACAGAGAAGGGGGCAGTGCATCTGCCCAGGGAAAGACATCTACCCTGAGAGTTAGCAGTTTGAATGTGTACAAGTCTGACCACTCCAGCCTGTGTGTCTCGTGGAAGCCTGTTACTCCAGCGACTGGTTATAGAGTAGTTATCCAATCTCTGAAAGacaagaaaacagaagacaggAATCTGGACAGTCTTACCAGTAGTCACTGCTTCACTGATCTACAGCCTGAGGTGGTGTATCGCATCAGCATGTACTCCCTGCTCCAAACAGCAGAGGGCACCCCAGTCACTGTCCTGCATTCTACAGCCGCTGGGCCTGCAAAACTTTCCCCTCCGTCCAGGTACATCCCTCACAACAATGAAGACCTGTTTCCATTAATATACAGCTcatatttgtctgtgttttgtgcagTGTGTCCCGAGGTGACCATCAGAAACACATTAGTCAAAGGCTTCGACATGATGGAGGCATTTGGACTAACCAGAAGTCAGTTTGCCTCAGTGGAGGGGGTGTCTGCAGAGCCCTTTGTGTTCAACACTATTCCCTCTTACACCATTTACCAAGACATCCAGCTGACACAGAGCACCAGttTCATCCATCCTGCAGGTATTCCTACTGAACATACCATCAGCTTCCTGTTCAGGGTCCTTCAGGACACCCCGAAGGATGCCTTTGCCCTCTGGCAGCTGACTGATGAAGACTTCCAGCCAAAGATTGGGGTCATCCTGGACCCTGTGAGAAAACATATAAAGTATTTTAGCCAGGATTTCAGTGAAGTGGTTCAGGAAGTCAACTTTGACCAACCCCACGTGAAAAAGTTGTTTCATGGCAGCTATCACAAGGTCCACTTGGCTGTAAGTGAAATCCATGTCAGTCTGTATATAGACTGTCAGCTTGTGGCTGAGAGCCCAGCCAACTCTCTGGGCACCATTCCCACCAATGGCTTTGAAATGCTGGGCAAGCTGGTGAAGACTAGAGGGCCGAACAGTGGATCTGTGTCATTTCAGATGCAGTCCTTTGAGATTGTCTGTAATGCTTCCTGGCCTTTGGAAGACACCTGTTGTGATATTCCAGCCAAGAGAGATGAGGAGAGCTGCCCAGCGCCTGCCTATGCCTGTACCTGCACCTCCAATATCCCAGGGGCTGCTGGGCCGCCTGGTCCCCCGGGTAAGCCAGGACCTAggggtgagagaggagagaaaggggagcCAGGGCCACAGGGGGAGGCCGGCCCTCCAGGGGAGATGGGCTCAGGGGGGCCAGCTGGTTCCCTGGGGTCCCATGGCCCTCAAGGAATGACAGTTCGAGGTCGAGTGGGTCCTCCTGGTGAACGTGGGGAAAAGGGAGACATTGGAAAGCCTGGACTTCAGGGAGCCCCAGGGCCACCAGGTCCTTTAGGAAAGGAAGGGGTGCCAGGCCCCAAGGGAACCAGAGGAGTGGAAGGAAATCAGGGCCCCCCTGGCCCCTCAGGTCCACGAGGTATGCCTGGGGTCCCAGGTGCAGAAGGGGAGAGGGGCCACCCAGGGTTGGTGGGGCCAACGGGGGAGCCTCAGTCCTTAGCTATCATTTATCAGCTTGTGACACAGGCCTGTGAACAGCTTGTCCATAATGAAGTACTGAAGCTGGACTCCTTCCTCAATGAGGTGAGCAGGAAGCCTGTCCCACTGGAAGAGCCAGTGGGGCCGCCAGGAGAACCAGGGACTCCAGGAACCACAGGGTCCCCAGGACCAAGGGGGGCACCT

Function

GO: NA

KEGG:

id description
K24357 COL20A; collagen type XX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36952 lncRNA upstream 13280 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA upstream 13280 47937390 ~ 47941754 (+) False AMCG00008249
TU36861 lncRNA upstream 339103 47613501 ~ 47615931 (+) True G29431
TU36855 lncRNA upstream 348609 47605140 ~ 47606425 (+) True G29425
TU36854 lncRNA upstream 352348 47602218 ~ 47602686 (+) True G29424
TU37001 lncRNA downstream 134529 48136469 ~ 48136724 (+) True G29546
TU37075 lncRNA downstream 413063 48415003 ~ 48419063 (+) True G29612
TU37081 lncRNA downstream 427035 48428975 ~ 48429218 (+) True G29615
TU37131 lncRNA downstream 672308 48674248 ~ 48676139 (+) True G29661
TU37145 lncRNA downstream 760032 48761972 ~ 48762297 (+) True G29675
AMCG00008249 mRNA upstream 15173 47929667 ~ 47939861 (+) False AMCG00008249
AMCG00008241 mRNA upstream 36906 47915946 ~ 47918128 (+) True AMCG00008241
AMCG00008243 mRNA upstream 46722 47895918 ~ 47908312 (+) True AMCG00008243
AMCG00008242 mRNA upstream 62963 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008239 mRNA upstream 141944 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008247 mRNA downstream 13160 48015100 ~ 48030729 (+) True AMCG00008247
AMCG00008246 mRNA downstream 40806 48042746 ~ 48067543 (+) True AMCG00008246
AMCG00008251 mRNA downstream 233747 48235687 ~ 48275348 (+) True AMCG00008251
AMCG00008252 mRNA downstream 290699 48292639 ~ 48326138 (+) True AMCG00008252
AMCG00008253 mRNA downstream 345807 48347747 ~ 48376071 (+) True AMCG00008253
TU36912 other upstream 38777 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 64351 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 64351 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 239497 47664517 ~ 47715537 (+) False AMCG00008238
TU36872 other upstream 317658 47632190 ~ 47637376 (+) True AMCG00008232
TU37226 other downstream 1161876 49163816 ~ 49171017 (+) True AMCG00008263
TU37330 other downstream 1402916 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 2349587 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 3424641 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 4098822 52100762 ~ 52101524 (+) True G30232

Expression Profile