RNA id: TU36952


Basic Information

Item Value
RNA id TU36952
length 2264
lncRNA type sense_over
GC content 0.38
exon number 4
gene id AMCG00008249
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47929667 ~ 47941754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATCATAAAttcctggatagcagaaaaactacaatTTCACCGGATTTGTCTTCCCTGAGTTCTGAAGGGAAAGATAACAAGTGCGGAACTACTATCTCCTGGAGCTCCCTACATCAAGAAAGTCGTCACAATAATTGGGGATGCAGTGGGCTGGGGCTTTGTAGTGCGAGGAGGATCACCCTGCCATGTCCAGGCAGTGGACCCCGGGGGTCCGGCGGCTGCTGCAGGAATAAAGGCAGGCCAGTTTGTGCTCCAGGTGAATGGAACCTGTGTCCTCAACCTGGACTACCAATCCATCAGTAAGATGATAATGACTGGCCCTCGCATACTGGTTCTTGAAGTGATGGAAGCCTTTGAGTTACGAGATTAAATAAGAGTACCGAGcaacattataataaacacatgCTGGCCATTTTATTAAGAAATGCTTTCTAAAGCCTTTTTAGCACTCTACACCAAGGGGTTCATGAGGATCTTTGCATAACTAATTTGATAGTCTTTTGATCAGACAGCAAATCAAGTGGACCTGGATGAGCCTTCTCACATTTGGACAATTCTTCTGGGATAGGACTAATTACTTGATTAGTCTACTTGAGGATTTAAGAAATGCAGTCCCTGTGATCTGTTTGTTGATTACGTTGGAAACACTTCTGACTGCTAAGTGACTGGCAGAGAAGGACTCTTCAAACATTTATTcacactgtacctgtaatacagcagcctaatctcctgggctgATCAGCACTCTGGTAACACTCTAGATTAAGGTGTCATTAATACATGATTGGGAAATATATGACTTATGTATTGATAGCACTTCtatcattttactgtaacttctCTTTTATGCCTACCCCACCCCTTAGCATATACCAGGGACATCACACTATTATGATTGCACTTGTTTGCTAATTTGCATTTAGatatatgcttattgtatttcataCTGATTGCATTCACTGCACcgtgaaatgttttgaaaatgtttctggtAAGTCGCCCTgcgtaagggcatctgctaagttTTAATAATATCAGGCTGAGCTTTGGTTAAACAAAgcaatgaatgaaaatgtgaatatgattttggaatattgttattattattatttttatttcttggcagacacccttatccagggcgacttacaacattaatatactgtattaaacAATGGGGGTACATGGAGGTGTTATGGATAATATGGAGAAGCAATCATTATTGACAATCtctgtttatgattattatttttgttaagtgATTAAGATGTTTGCATTTTGCTAAACATTATCCTGCAGTATcctttttatatacatgtacaaacaaacaatatacagttaggtccagaaatatttggacagtgacacaattgtcattactTTGGCTCTGTACGGCACCACCatggatctgaaaggaaacaatcaagatgttctttaagtatagactttcatctttaatctgatggtagttacatccaaattgggtgaacagtgtaggaattacacccatttttatatgtggtccccacaTTTTTAGgagctcaaaagtaattggacaaactaacataatcatgaattaaattgtgattttcaatacttggttgcaaataatttgcagtcaatgactgcctgaagtctggaacccatagacatcaccagatgctgggtttcttccctggtgatgctctgccaggcctgtactgcagctgtcttttaATTGTACACACTAATTCTGCTCTCAGAAAACCAAATCAGCttgaaataaaaagaagaaactatgtcaaaacaacagcaaaattaGTTTTCATGAAGTGCATGGTATGgctctgtgtttatttactgcACTGTCTCAGTGACACTGCAAAATTAAAGATGTTTTTGTTCCCACCAGTAACCTAATATAAGGATCTGCACACTGAGGCTATTTAATTGTGAATACAGAACATTGTGATGAATTATTCATTAGGTTAAGTGAGTTAAAAATGACTTCTGAGGCATACATGTGACATTTGTGATTGCACACATCTCTATGGAGTCTAATATGCAATTATATATTCTTAGGTTATTTAGTATATCCTGTATTGATTTCTGTTCCCATGTTATTTTGTCACACTTGAAACAACTGTATGACTATTAATGCATCAACAGCATATAATTTCTTCAAGGGTCTCAATCAATTGGAGGCTggcatgcaaatatattttcctaACAAACAAGTATCAgtggtgttttcttttcaatgaaaaacagataTTTCAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36861 lncRNA upstream 321035 47613501 ~ 47615931 (+) True G29431
TU36855 lncRNA upstream 330541 47605140 ~ 47606425 (+) True G29425
TU36854 lncRNA upstream 334280 47602218 ~ 47602686 (+) True G29424
TU36853 lncRNA upstream 335865 47600820 ~ 47601101 (+) True G29423
TU36852 lncRNA upstream 337498 47599234 ~ 47599468 (+) True G29422
TU37001 lncRNA downstream 194715 48136469 ~ 48136724 (+) True G29546
TU37075 lncRNA downstream 473249 48415003 ~ 48419063 (+) True G29612
TU37081 lncRNA downstream 487221 48428975 ~ 48429218 (+) True G29615
TU37131 lncRNA downstream 732494 48674248 ~ 48676139 (+) True G29661
TU37145 lncRNA downstream 820218 48761972 ~ 48762297 (+) True G29675
AMCG00008241 mRNA upstream 18838 47915946 ~ 47918128 (+) True AMCG00008241
AMCG00008243 mRNA upstream 28654 47895918 ~ 47908312 (+) True AMCG00008243
AMCG00008242 mRNA upstream 44895 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008239 mRNA upstream 123876 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008238 mRNA upstream 220384 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008248 mRNA downstream 13280 47955034 ~ 48001940 (+) True AMCG00008248
AMCG00008247 mRNA downstream 73346 48015100 ~ 48030729 (+) True AMCG00008247
AMCG00008246 mRNA downstream 100992 48042746 ~ 48067543 (+) True AMCG00008246
AMCG00008251 mRNA downstream 293933 48235687 ~ 48275348 (+) True AMCG00008251
AMCG00008252 mRNA downstream 350885 48292639 ~ 48326138 (+) True AMCG00008252
TU36912 other upstream 20709 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 46283 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 46283 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 221429 47664517 ~ 47715537 (+) False AMCG00008238
TU36868 other upstream 265545 47627296 ~ 47671421 (+) False AMCG00008232
TU37226 other downstream 1222062 49163816 ~ 49171017 (+) True AMCG00008263
TU37330 other downstream 1463102 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 2409773 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 3484827 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 4159008 52100762 ~ 52101524 (+) True G30232

Expression Profile