RNA id: AMCG00008250


Basic Information

Item Value
RNA id AMCG00008250
length 2166
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00008250
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48462293 ~ 48474532 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGGTTAATATGGAATATTCTACTGGCGCTTTGTTTTCCTCAGCGGTACTTGGGGAAAGTAAATCTGTTgctgatatatttaaattggcaaattgtgatgattattaattaaatcgGAATTCAGTTACTTAGTAAAAACGACGTAAGACCTTTTGCTAATagcaaataataacaaatacattaatatatttgaaagaagATTGAATGAGAATACACACGCCTGCTTATTGTCTCATTTCTTGAACATTTGTGAATGCACTTCACTGGGAGTCCGTAAACTTTGtttcagccttttttttttgtattattttattcgaTGCATAGTGATGCATTTCtcgatttgttttttcattttttttgtggggCAGTCCACGTTTTGGGCACCCGTCTGTAATGCAGGGTGTATGCACTCGGGCTTGTGCTGCAGCGGCCGGGACGCGCTGTGCGTCAGCCAGGGATGGAGACCCGACCGGTCCCATGGGACTTGCTACTGCGACCAGGCGTGCACTGCCACCCTGGACTGCTGCCACGATTACCAACAAGCATGCCCAGCGGTTTCCTGTGAGGTGAGTCAGTGGAATGCATGGTCTGACTGTGCGGAGCCTTGCACAACCACATACCGAGTTCGTAGGAGACATGTGGTTCAAGAGCCGCAGAATGGGGGCGGTCCCTGTCCTCATGTCCAGGAGTATGCTGGCTGTGTGGAATATTGGAGTCAACACAAGGAGTGTCGAAAGTCTTTAGTTCCTGCACTTATCACTACAGGGGGTTATGGCACAGCTAGGAGGAAAAGAGACCTCTCCAGCACCAGGGATATGAGAGGGTACTGTGTGCAGTTCCTAGTGAAGTCGCTTTCTTCTGGGTGTCAGCACACCAGGGGGCCCCACATGCACTGGATGCGGTACCTGCGCGAGGGCCACACCGTGTGTGTGGAGTGCCAGCCCCCCGCTCTCAGCACTGATCAGCAGTGCAATGGTGATGGAGAAGAAGCTGAAAAGAACCAGATTCTTCAATGGCAGGCCGTGGGGAACACACACTGTTGGGGAATGTGGAAACGCATGCGTCGCCTGGATTTCTGTTCCTGCCCCATTGTGCACAGCTTTCTATTTATCTGAGGTTTATTTGTCAAGTCTTACAAAGGCATGATCTATGCATGCTGCTGGACCcaagttatttaaacaaattaacaaaaataaaatctttaaaagattATAACATTTTTTAGCAGGGTTGTTTGGGCTGAGTCACATGGGAATCTGTGTGCATACTTATTTTGTGGTATAATGAGAGAGAACTTCATATCATAGTTGGGTGGAAATGCATCCTAGTTGGTGAGTTCTTATGaataattgcttttattgtCTGCATTGTACAATCcaaacatttttgctttgtgataTTGCAATAGAAAATGTCTTaatatttattagtattagcataaagtattattttgcaatgtatAGTACAGAATGatgaaatacaaaagtgcaaaattttgtattcaaatataaaacattacattgtttacatttgtcattcatgatttgccttttatatttacttgattaaaatataattacatacaatTCGTCTATGATGTGTAATGAAAGTAAAACACTTAAATCACTTAAGTTAAAATACCTCTGCTTAAACGGTCTACTGGAAACAACAttattgctttgaaatgctcaCTTAATAAAGTTTTCTTGAAAAAAGTTTGTCATACAAGTGAGATGTAGTATGATAGGGAATGCAACAGACACCACTTCACACAACTCACATCCAGGTGAGCTTTCTGGTTGATGAGTCCAAACTGGACCAACATTTGAGCAGACATAAAATTGATTTTGAGTGCACAAAAATGGGTAATATGACTAGTGGTATGCAAGATTAATCATTCAAATGCATAATGAAGCAGaagaaactaaatacaaaaatgagtttgtaattgaatttctgtatttgtaCTGGGAATAAATGTAGTTGTCAGCAAGTTACAATCCAGAGTTTTCAGTATTAGTCTAAGGAAGTACAATATCATTGTGTGTGAATGTTGAAAGATCAAATAAAGGGCTAGAGTTTGCATGCATGAACTACAGCATCAAAAATGAATACACTGACAAAATGAGTAATGGAGTAAAGGAGAAATAATGCTAGTATTGAG

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37081 lncRNA upstream 33075 48428975 ~ 48429218 (+) True G29615
TU37075 lncRNA upstream 43230 48415003 ~ 48419063 (+) True G29612
TU37001 lncRNA upstream 325569 48136469 ~ 48136724 (+) True G29546
TU36952 lncRNA upstream 520539 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA upstream 520539 47937390 ~ 47941754 (+) False AMCG00008249
TU37131 lncRNA downstream 199716 48674248 ~ 48676139 (+) True G29661
TU37145 lncRNA downstream 287440 48761972 ~ 48762297 (+) True G29675
TU37147 lncRNA downstream 288153 48762685 ~ 48803905 (+) True G29677
TU37163 lncRNA downstream 345943 48820475 ~ 48820694 (+) True G29692
TU37200 lncRNA downstream 492424 48966956 ~ 48967220 (+) True G29722
AMCG00008253 mRNA upstream 86222 48347747 ~ 48376071 (+) True AMCG00008253
AMCG00008252 mRNA upstream 136155 48292639 ~ 48326138 (+) True AMCG00008252
AMCG00008251 mRNA upstream 186945 48235687 ~ 48275348 (+) True AMCG00008251
AMCG00008246 mRNA upstream 394750 48042746 ~ 48067543 (+) True AMCG00008246
AMCG00008247 mRNA upstream 431564 48015100 ~ 48030729 (+) True AMCG00008247
AMCG00008262 mRNA downstream 449332 48923864 ~ 48940095 (+) True AMCG00008262
AMCG00008263 mRNA downstream 690825 49165357 ~ 49169928 (+) False AMCG00008263
AMCG00008270 mRNA downstream 814709 49289241 ~ 49292055 (+) False AMCG00008270
AMCG00008271 mRNA downstream 930399 49404931 ~ 49407073 (+) False AMCG00008271
AMCG00008272 mRNA downstream 994757 49469289 ~ 49471615 (+) True AMCG00008272
TU36912 other upstream 546036 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 571610 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 571610 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 746756 47664517 ~ 47715537 (+) False AMCG00008238
TU36872 other upstream 824917 47632190 ~ 47637376 (+) True AMCG00008232
TU37226 other downstream 689284 49163816 ~ 49171017 (+) True AMCG00008263
TU37330 other downstream 930324 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 1876995 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 2952049 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 3626230 52100762 ~ 52101524 (+) True G30232

Expression Profile