RNA id: AMCG00008253


Basic Information

Item Value
RNA id AMCG00008253
length 1707
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00008253
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48347747 ~ 48376071 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCTGGTGAATGAGTTAGCCCGTTTCAACAAGATACAGCCAGAGTACAAACTTCTGAGTGAACAAGGACCAGCTCACTCTAAGatATTTTCAGTGCGACTGACTCTGGGGGAGCAGCACTGGGAAGCTGAGGGAACCAGCATCAAGAAAGCTCAACATGCAGCTGCTGCCAGTGCCCTCTCCCAAACCACACTGCCCAAGCCCAGTCTACGGCCCCCTCGCAACACAGGCAAGAACCCAGacagTATAACCCATACTGTGGAGCTAAATGCACTTTGTATGAAACTTGGAAAAAAACCAATCTACAAACCCATTGATCCTTATCCTGGAATGAGACCCAACTTCAATTACAATGTCCGAGCTCCTGGCCCCTATCCAAGGTACTATTACCCGTTCCCCCCAGTGGGGCCAGTGCTGTATCATATGGAACTGTCTATCGGGGGCCAGCAGTTCCATGGCAAAGGTAGGACCAGGCAAGCTGCAAAGCACGATGCCGCTGCCAAAGCACTGAAGGTCCTACAGAAAGAGCCCCTTTTGGAGAAGAAGCTGGAGGTAAATGGAGAACAATCAGAAGAGAACctaaacaaatctgaaatcaGCCAAGTATTAAAAGAAACTGGGCCCCCACACATGAAGAGCTTCATCATTAAAGTGTCTGTAGGTGAATTTTCAGGGGAGGGAGATGGAAAGAGCAAAAAGATTGCAAAGAAGAACGCAGCCACGGCTGTGCTTGATGAGCTGAAGAAACTGCCACCACTTCCCAGTGTGGAGAAGGTGCAGCCACGcatcaaaaagaaaaccaagtCAATAGTTAAACTACAGACGAGCCCGGAGTACGGCCAGGGCATGAACCCTATCAGCCGGCTTGCTCAGATCCAGCAGGCGAAGAAAGAGAAGGAGCCGGAGTACAGCTTGGTTACAGAGAGGGGGCTTCCCCGTCGCAGAGAGTTCATCATGCAGGTCAAAATTGGCAACCAGTCTGCAGAAGGCATGGGTCCCAGTAAGAAGGTAGCTAAACGTAATGCAGCTGAGAAGATGTTGGAGCTAATGGGATTTAAAGTGCCTCAGCCACAGCCCCCCAAACCTGCTTTAAAAACTGACGAAAAGgtacCATTGAAGAAACCTGGAGACGGAAGGAAAGTGACCTTCTTTGAGCCAGGATCCGTAGAGGATAGCGGAATAAGTAACAAGGAAGATGATTTCCGGATGCCCTTCATGAGTCATCAACAATTGCCAGCAGGGATCTTGCCAATGGTACCAGAGGTGGCTCAGGCTGTGGGTGCCAGTCAAGGACATCATATAAAAGACTACAACCGCTCCCCCATTAATCCTGCTAAGGCCACTGTCACAGCAATGATTGCCAGGGAGCTGCTGTATGGTGGCACGTCTCCAACAGCCGAGACCATCCTAAAAGGCAGCAACAGCCTCGGACACCTCCCGCACGGACCCCTCACCCGACCCTCTGAGCAACTCGACTACCTGTCCGCTGTACAAGGACTCCAGGTGGAGTATAAAGACTTTcccaaaaacaacaagaacgAGTTTGTGTCTCTGATAAACTGCTCATCCCAGCCCCCTCTTATCAGCCATGGAATAGGCAAGGATGTGGAATCTTGTCACGATATGgCTGCCTTGAATATACTGAAATTACTCTCAGAGCTGGACCAACAGTCTAACGACAGAACTGGAAACGGACCAATTTCT

Function

GO: NA

KEGG:

id description
K17597 STAU; double-stranded RNA-binding protein Staufen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37001 lncRNA upstream 211023 48136469 ~ 48136724 (+) True G29546
TU36952 lncRNA upstream 405993 47936966 ~ 47941754 (+) True AMCG00008249
TU36951 lncRNA upstream 405993 47937390 ~ 47941754 (+) False AMCG00008249
TU36861 lncRNA upstream 731816 47613501 ~ 47615931 (+) True G29431
TU36855 lncRNA upstream 741322 47605140 ~ 47606425 (+) True G29425
TU37075 lncRNA downstream 38932 48415003 ~ 48419063 (+) True G29612
TU37081 lncRNA downstream 52904 48428975 ~ 48429218 (+) True G29615
TU37131 lncRNA downstream 298177 48674248 ~ 48676139 (+) True G29661
TU37145 lncRNA downstream 385901 48761972 ~ 48762297 (+) True G29675
TU37147 lncRNA downstream 386614 48762685 ~ 48803905 (+) True G29677
AMCG00008252 mRNA upstream 21609 48292639 ~ 48326138 (+) True AMCG00008252
AMCG00008251 mRNA upstream 72399 48235687 ~ 48275348 (+) True AMCG00008251
AMCG00008246 mRNA upstream 280204 48042746 ~ 48067543 (+) True AMCG00008246
AMCG00008247 mRNA upstream 317018 48015100 ~ 48030729 (+) True AMCG00008247
AMCG00008248 mRNA upstream 345807 47955034 ~ 48001940 (+) True AMCG00008248
AMCG00008250 mRNA downstream 86222 48462293 ~ 48474532 (+) True AMCG00008250
AMCG00008262 mRNA downstream 547793 48923864 ~ 48940095 (+) True AMCG00008262
AMCG00008263 mRNA downstream 789286 49165357 ~ 49169928 (+) False AMCG00008263
AMCG00008270 mRNA downstream 913170 49289241 ~ 49292055 (+) False AMCG00008270
AMCG00008271 mRNA downstream 1028860 49404931 ~ 49407073 (+) False AMCG00008271
TU36912 other upstream 431490 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 457064 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 457064 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 632210 47664517 ~ 47715537 (+) False AMCG00008238
TU36872 other upstream 710371 47632190 ~ 47637376 (+) True AMCG00008232
TU37226 other downstream 787745 49163816 ~ 49171017 (+) True AMCG00008263
TU37330 other downstream 1028785 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 1975456 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 3050510 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 3724691 52100762 ~ 52101524 (+) True G30232

Expression Profile