RNA id: TU37079


Basic Information

Item Value
RNA id TU37079
length 1651
lncRNA type sense_over
GC content 0.36
exon number 7
gene id AMCG00008255
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48411085 ~ 48418933 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGCTTCCTACAACGTGTGGACTTTCTTTCACTGCTGCACTGTGAGCAGGTAAGATGGGGGTAGTCATCCAGTGTGATCTTGcataacaatatttataaaaatcatGTGTGCACACGAAGTTACTTTTCTGATTGTGTTAAAGCTACGGATCAATATACAATACCGTATATTAATCTCTTTCGATGTATATAATGCGATTAAATGGACGAGTTATAAAATTCTGCTACATAAACATGCCtgctatattaaatataatgtatcaaGCAATAGATCAGTTTTCTACagtttaggaaaaaaaacacgtttTCAAGGAAGCCCTTAAGTCACGTACTCCTTCGCTCGCACACGTGTAGGCTGCTGTACTACTGATCGCCATTGCTAAACAGTTTAAATCTAATTTCGTTTACTTTTAACTTGTATCGCAGCACGTTGTTTCAATAAAGCTCTATACTTACTGCAGTGATCTTTTTCCATCTCATTTCAAATGTGCACTTTTCAATCTGTCTGTTTAAAACTGGATTACAATCGCGTAGTCGGCCAATGAAACTACATGAAGAGGAATTGCTTTCTATAGAGTGTATCGATTTAAATCTCCAACTTCTGTACCTATGGCAGTGTTAATCAAATATCAATCATCCCAAGGGTCCAATGTTAAATCTTTAGAATAACAACTGATCGCACGAAAATAACGAGTACTAGCGGTTGTAAGGACATTCTGAGAACTGATTTATGAAGTattgatgtaatttaattgaatgtaagcATTAATaactattaaatgtaataagatatatatatatatttatggatgttttatattaatcagTCTTTACATCTGTAATGAAATCATATCAAGTTTCTATAAGCATAGCCTTGCCTAGAAAGATCATTGTTCAGATGTGGCTGAgaatcaaatgttttgcttgtaataaatgcattttgcagTCTTCATTTGTATgcacaacaaaacatgtatattgtCGTGACTATAAGGAAGATTACCTGAATTTAAAATGGTTCCTCTAAGGTAAATGTGTTCGTTATACAAGTAATAGCTACCaattcttgatttattttgcaggatTCTTGTTAATGAAAATGGTATTGAATGTGCAGAAATTGCAATGGGAGATCAGACTGAAAGATCCGTACCTGGGATTGTGACTTTGATTAAGAATTCATCTGTGGTTTTCCCTTGGGATGCCTATGCCATTAAGACTGGGGATAAGCGTCCTGGCTAAAGTTGGAACAATGTCTCTTGGTGCCGTATAGATACTAGGTATCACCATGGTGGCTGCATTTGGAGAATCTTTGGGTACCATATAGATACCTGCTAGAACCATGGTGGCTGCAGTTGGAGCTTTGCCTCTGGGTACCATATAGATGGATGTGTGGATTGGTGCCTCTGGTTGAAGTGGCTTCTGGGTGGCATATTGCTcATCAAGGCTGGAGATCTGCTCTTCCCAGCAGATGTAAAAGTTCAGGTTCTATTCAACCTTCAATGAGATCTTGATGTATTGAATTCAGCCATTTAATgtaatgctgtttttgtatgagTTTAGTTAAAATgaccttttcagttttttttgtaacagTTGTCCTGTTAAACCTTTTGCAAcgcatgtaaaataaacaactttatCTCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37057 lncRNA downstream 82061 48332108 ~ 48332942 (-) True G29595
TU37044 lncRNA downstream 117704 48295053 ~ 48297299 (-) True G29583
TU36985 lncRNA downstream 384090 48027717 ~ 48030913 (-) True G29530
TU36976 lncRNA downstream 402048 48008657 ~ 48012955 (-) True G29521
TU36924 lncRNA downstream 524320 47713934 ~ 47890683 (-) False AMCG00008245
TU37126 lncRNA upstream 146764 48565667 ~ 48653934 (-) True G29656
TU37143 lncRNA upstream 313357 48732260 ~ 48732591 (-) True G29673
TU37146 lncRNA upstream 343069 48761972 ~ 48762297 (-) True G29676
TU37165 lncRNA upstream 414636 48833539 ~ 48833822 (-) True G29694
TU37166 lncRNA upstream 423448 48842351 ~ 48842613 (-) True G29695
AMCG00008256 mRNA downstream 123560 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008254 mRNA downstream 212541 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008245 mRNA downstream 496891 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008244 mRNA downstream 527704 47882297 ~ 47887299 (-) True AMCG00008244
AMCG00008240 mRNA downstream 622482 47783301 ~ 47792521 (-) True AMCG00008240
AMCG00008258 mRNA upstream 65492 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008257 mRNA upstream 255625 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008260 mRNA upstream 419245 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008259 mRNA upstream 441252 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008261 mRNA upstream 725270 49144173 ~ 49169545 (-) True AMCG00008261
TU37036 other downstream 131790 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 290321 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 496541 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 1933105 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2360657 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 1377068 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1634922 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1854835 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 2105084 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile