RNA id: AMCG00008257


Basic Information

Item Value
RNA id AMCG00008257
length 2954
RNA type mRNA
GC content 0.38
exon number 9
gene id AMCG00008257
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48674528 ~ 48697834 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTCCAGATCTGACCAGGTCACCTTTGATTGTAATTGAacctgaaaatgtaatatgagGCATTGTCAGAAGTACATATCTTTTTACAATCCAGATCAAAAGACGAACCGCCTCTGGATAAAGGCTTCATTCCATGGCTGGGCCATGCCATTGACTTTGGAAAAGATGCTGCAAGATTTTTAACACGAATGAAGAACAAACATGGAAACATATTCACTGTGCGTGTGGCTGGACAATATGTGACTGTCCTGTTGGATCCAAATTCATATGATGCTGTCATTATGGATTCAACATCACTTGACTTCACTCTCTATGCACAATTATTAATGCAGAGAATATTCAACCTTCAACTTCCCCAGCATAATCCCAAAACAGAAAGGGAAATGATGAAGAAGCATTTGCAGGATAAAAGCCTTGCTTGTCTAAACAGGGTAATGCAGAAAAACCTTCAGGCTCTGATGATGTCAGACACACACGAAAACAggagaaactggaaaaaagaCGGTCTCTTTAGTTTCTGCTACAGCTTGCTGTTTAAaGCTGGCTATCTCACCCTATTTGGCAACAGGCCAGaagaacatgaaaacaacaatgaattaaatgtaatttataaggAATTCAGGAAATTTGATTCCCTTCTGACAAAAATGGCTCGGACTACACTGAAACCAAaggaaaagaaaacagctaCTACTGTGAAGGAGCGCCTATGGGATCTTTTGACTCCAGCTAAACTGAACTCCAAAGCCAACCCCAGCTCCTGGCTGGAGAGCTACAGACATCACCTACAGGATCAGGGCACAGATGAGGAAATGCAGAGAAGAGCAATGTTGCTGCAACTTTGGGCAACACAGGGAAATATAGGTCCTGCTGCCTTTTGGATGCTGGGATTCCTGTTGACAAACCACGATGCCATGATGGCTGTGAAGAATGAATTTCGAAGGCTAACGGTTGAAGGCAACACAATGGGCATCAACCAGGAAATGCTCAACAACACACCAGTGTTCGaCAGTGTTTTCAATGAGACCCTCCGGCTGACAGCAGCACCTTTCATAACCAGAGAGGTGCTTCAGACTATGAGCCTCAAATTGGCAGATGGTACACAGTacagactcagaagaggggacAGGGTTTGCCTTTTCCCATATCTTAGTCCCCAGATGGACCCAGAGGTTCACGAGGAGCCTGAGaaattcaaATATGACAGATTCCTTAACTCGGATGGAACTGAAAAGAAGGATTTTTTTAAGGCTGGGAAGAAGCTCAAATATTATACCATGCCATGGGGAGCTGGAAACAACATATGTGTGGGAAGATTCTTTGCAATCAGTGGTATCAAACAGTTCCTCTTCATGGTGCTGACCTGTTTGGATATTGAGCTCTGTGACCCAGAAGCTGTGATACCAGGCATGGATGTGAGCCGCTATGGGTTTGGAATGCTACAGCCTGATGGAGACCTTGAGATTCAATACAGACTGAAGAACCAGATCTGATATTTAACAGCAAAGGATTGAAATACTGCGcttaatatttattcaaaacatacTGACATCCATATTGCCAAAGGGCTGTCAagtgattaattattttaattgcgaTTAATCTCACATTTCCACGAATTAATTGTGATTAATTGCATCTTAAAATgacagtacatttacattttatatgagTGTAATTCTAGGAAAATTGGTGTAAAATAATCCCAAGGaaatgttttctgctttttcatcataaatgtactgaaaagggTTTCCTGTAAATGCAGTTAgatcattgatttatttgatttgactaattaatttcactgaaaaagtgaataaagtttaaaatatgcACTGGATCATTTAGACTTTTAAAGGCACAGGCTCAATATAGGAACTAAAAGCCATAGTGCTGCAGGTCACCTATTTCTTCTCACTGAGTCAGtcttaacattttcagaagacaaAGCTACTCTCttctatattattataactgaCTCCGGACACCACATTGACTAGCACTTTGAACATTAGCATGCTTGTTTTTTAGGTGATAGCTCAAACTTGATGTGCTTGTATGATATATCAAAATTCACCTTCACAGAGATTAATATTACTTTGGTTTTGTCCGTAGAACCAAAAGTGCTTTCAAATGGAAACAGCCATTTATTAATCCACCTGTTTTCTCTATCACGATTGCATCTGTTGTTCAACTATGGGTGCACAGGATGCTCAAAATAGATAAATGCAATGAATGCGACTAattgcataaaaaaatgaacatgttGTTGTAAATGAATGGCATGTGTTAACGCTGACAGCCctcagatatatatacacacatacatacagtatatacacacataatgATTGTATACTTGTTAATTATAATCTTTAATCTCCATACTTTTCTTTTATGTCCACTATTTTTTTCAGGTCTTCACCATGACTCTGAGATAAGAGGCTTTTCACAGTACAAGTGACAGAGATTGTACAGATTTTGCACTGTTTTGAAGATCTTTTTATGAAATAAGTTGAGCTggaaacatacattatattacaataatCACTGAATAATtgtcaataatttaatttgaatctgtTCATATAGTATAGTAGTCTCACAAGACAGTTTCCCAAAACATCTGAACTACCAACTTATACCCAGTTGAAAACGTATTAAGtctaaaaagtaatacaaataatgctaTGCACTTGTGTGATGTCTGTTGATGCCTCATAGACTTCAGAGCACAAGGCAATCACACCTATTATAAAGCATCAGTGACCCCTGGATGTTTTCATGATATCTCTTACAGCTCTTACATATGTAGTAGTGttgactgtgtttgttttctctgcaatCAAGCGTTGGCTTTGCAATATAACATTAAATGGTTGATTTAAGTTTAATTATCCTCAATTCCAGCCATTGTCCTTTCTCAACATAACTATAATACAATTTCATGG

Function

GO: NA

KEGG:

id description
K01831 PTGIS, CYP8A; prostacyclin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37126 lncRNA downstream 20594 48565667 ~ 48653934 (-) True G29656
TU37077 lncRNA downstream 255625 48415003 ~ 48418903 (-) False AMCG00008255
TU37078 lncRNA downstream 255625 48415003 ~ 48418903 (-) False AMCG00008255
TU37079 lncRNA downstream 255625 48415003 ~ 48418903 (-) True AMCG00008255
TU37057 lncRNA downstream 341586 48332108 ~ 48332942 (-) True G29595
TU37143 lncRNA upstream 34426 48732260 ~ 48732591 (-) True G29673
TU37146 lncRNA upstream 64138 48761972 ~ 48762297 (-) True G29676
TU37165 lncRNA upstream 135705 48833539 ~ 48833822 (-) True G29694
TU37166 lncRNA upstream 144517 48842351 ~ 48842613 (-) True G29695
TU37192 lncRNA upstream 226279 48924113 ~ 48940099 (-) True G29717
AMCG00008258 mRNA downstream 30586 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008255 mRNA downstream 255595 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008256 mRNA downstream 383085 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008254 mRNA downstream 472066 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008245 mRNA downstream 756416 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008260 mRNA upstream 140314 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008259 mRNA upstream 162321 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008261 mRNA upstream 446339 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008264 mRNA upstream 477891 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008265 mRNA upstream 571786 49269620 ~ 49280998 (-) True AMCG00008265
TU37036 other downstream 391315 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 549846 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 756066 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2192630 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2620182 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 1098137 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1355991 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1575904 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1826153 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile