RNA id: AMCG00008258


Basic Information

Item Value
RNA id AMCG00008258
length 894
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00008258
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48484395 ~ 48643942 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAAACAGGCTTGAATAAATCCGGCTCTCGATCGACTACCTCGTTGCCTCCGGAGCCCGTGGAAATCATAAGGAGCAAAGCATGCTTTCGGAGAGTGAGGCTCAACGTTGGCGGTTTGCCCCACGAAGTTCTGTGGAGAACGTTGGACAGGTTGCCCCGCACTCGCCTGGGCAAACTACGAGACTGCAACACACACGACTCTATCATGGAGATATGCGATGACTACAGTTTGGAGGATAATGAGTACTTTTTTGACCGACACCCCGGGGCATTTACttcaattttgaatttttaCCGCACAGGCAAATTGCACATGATGGAGGAAATGTGCGCTCTGTCCTTCAGCCAAGAACTGGACTACTGGGGTATCGACGAAATCTATCTAGAGTCTTGCTGTCAAGCTAGGTATCACCAGAAAAAGGAGCAAATGAACGAGGAGCTGAAACGAGAGGCCGAGACTTTAAGGGAAAGAGAGGGCGAGGAATTTGATAACACATGTTGTGCAGACAAGAGAAAGAAACTTTGGGATCTTCTAGAAAAACCAAGTTCCTCGGTGGCAGCTAAGattTTGGCCATCATATCAATCCTCTTCATTGTACTGTCAACAATTGCCTTGTCACTCAACACACTCCCAGAGCTCCAAGACATGGATGAGTTTGGCCAGAAAGACATCCATGTAAAATTGTACCCAGACATGGCCACACTCAACTGGGACAGCAACACCCCTACCACTCGCACTGAGCGCACCTGCAGCCTTCCTGCCAAGGCCTCCGCACTCATCCAGCCACCGCCCCTCCCCATCCCGCCCCAGCCTGGTCACACCTGCCTTAACCAGCCTGCTGTGCAAGCCCTGAGACTCCAACACAGGGAGCCGCAGTGCAGGaaTTAG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37077 lncRNA downstream 65492 48415003 ~ 48418903 (-) False AMCG00008255
TU37078 lncRNA downstream 65492 48415003 ~ 48418903 (-) False AMCG00008255
TU37079 lncRNA downstream 65492 48415003 ~ 48418903 (-) True AMCG00008255
TU37057 lncRNA downstream 151453 48332108 ~ 48332942 (-) True G29595
TU37044 lncRNA downstream 187096 48295053 ~ 48297299 (-) True G29583
TU37143 lncRNA upstream 88318 48732260 ~ 48732591 (-) True G29673
TU37146 lncRNA upstream 118030 48761972 ~ 48762297 (-) True G29676
TU37165 lncRNA upstream 189597 48833539 ~ 48833822 (-) True G29694
TU37166 lncRNA upstream 198409 48842351 ~ 48842613 (-) True G29695
TU37192 lncRNA upstream 280171 48924113 ~ 48940099 (-) True G29717
AMCG00008255 mRNA downstream 65462 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008256 mRNA downstream 192952 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008254 mRNA downstream 281933 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008245 mRNA downstream 566283 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008244 mRNA downstream 597096 47882297 ~ 47887299 (-) True AMCG00008244
AMCG00008257 mRNA upstream 30586 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008260 mRNA upstream 194206 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008259 mRNA upstream 216213 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008261 mRNA upstream 500231 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008264 mRNA upstream 531783 49175725 ~ 49251899 (-) False AMCG00008264
TU37036 other downstream 201182 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 359713 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 565933 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2002497 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2430049 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 1152029 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1409883 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1629796 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1880045 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_00333019_00452055.mRNA True 2121 mRNA 0.49 2 CI01000018 333019 ~ 452055 (-)