RNA id: AMCG00008259


Basic Information

Item Value
RNA id AMCG00008259
length 771
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00008259
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48860155 ~ 48861604 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATGGTATGTTTTGGCATTGGTTCTTTGTCTAAGTTTCCCGTCTTCAGTGCAGGCAGATTGCTCTTCCCAGTGCTTAGCCTGTGCGCAACAGATCCAAGATATAGACACCGACATTAACAGTCTGGATTGCACATTAGAGTGCGAAGGAGCACTGGCGTCCGTTAGGCCTACAGAACTGGAAAAATGCGAGAAAGCTCTTCAGATTTTCCCTGTTGGTGTGACTGAAATAGGCAAGAACAAAGTGAAAAGAGAGGCAAGGGAAGACCAGCAAGGCTTGTCCATCAGCAACTTAGTTAAGCGTTATGGGGGATTCATAAAGAAagtggacaaaaacaaaattttcAGCAGTTCTCCAATTCGAGAAAATGCAAACCTTAAAGGCCTCCTCGCCAAAAAGTATGTGAATTTGCTCAGAAAGTTCGGTGAACGAGACATCCCAGAAACACTGCAAGACACCCAACTGGGAGACGAGACGTCTAAAAACGAGGAGGTGGTCTATAATGATGACAATACCGCTATTAATGAAGTAAAACGATACGGAGGGTTCTTGCGGAAATTTGGCCCTAAAAGAAGCTATGACTCTGTGGAACAAAGTAGCCAAGAAGAGTTGCAAAAGAGATATGGAGGTTTCATGCGAAGAATCCGGCCAAAGCTCAAGTGGGATAATCAGAAGAGATATGGCGGGTTTCTAAGACGCCATTTCAAGATATCAGTTAGGTCAGAAAAAGAACCTAGCTCGTATCCTGATGATGGGGTTGACCTATAG

Function

GO:

id name namespace
GO:0031628 opioid receptor binding molecular_function

KEGG:

id description
K15840 PDYN, PENKB; proenkephalin B (prodynorphin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37166 lncRNA downstream 17542 48842351 ~ 48842613 (-) True G29695
TU37165 lncRNA downstream 26333 48833539 ~ 48833822 (-) True G29694
TU37146 lncRNA downstream 97858 48761972 ~ 48762297 (-) True G29676
TU37143 lncRNA downstream 127564 48732260 ~ 48732591 (-) True G29673
TU37126 lncRNA downstream 206221 48565667 ~ 48653934 (-) True G29656
TU37192 lncRNA upstream 62509 48924113 ~ 48940099 (-) True G29717
TU37201 lncRNA upstream 105434 48967038 ~ 48967343 (-) True G29723
TU37266 lncRNA upstream 321164 49182768 ~ 49253244 (-) True AMCG00008264
TU37301 lncRNA upstream 466969 49328573 ~ 49328840 (-) True G29806
TU37324 lncRNA upstream 538565 49400169 ~ 49400479 (-) True G29825
AMCG00008260 mRNA downstream 20810 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008257 mRNA downstream 162321 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008258 mRNA downstream 216213 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008255 mRNA downstream 441222 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008256 mRNA downstream 568712 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008261 mRNA upstream 282569 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008264 mRNA upstream 314121 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008265 mRNA upstream 408016 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008266 mRNA upstream 437929 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008267 mRNA upstream 483884 49345488 ~ 49361511 (-) True AMCG00008267
TU37036 other downstream 576942 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 735473 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 941693 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2378257 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2805809 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 934367 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1192221 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1412134 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1662383 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile