RNA id: AMCG00008260


Basic Information

Item Value
RNA id AMCG00008260
length 798
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00008260
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48838148 ~ 48839345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcagagagaggcACTTCAGCTTAGGGAGGAGAAAGATCAGATTGCATTGGCTAATGCTAAGTTAGAGCAGAGCATTGAGGTGCTAAAGGAAGAGTTGCAGAAGCAGATGCATAGTGAAAGAAAAGAGACCATGAAACTTATTTACTATAAAAGAACATTTGCAATGGATGGTGAACAGAGCTTAAGTGTGGCAGACAAGGTTGGAGAGTTAAATGAAGAGGTGCTGTTCTGGCAGGGCGAGTGTGAAGAAGTGAAGGGAGAGTTGGACAAGTTCTTAGAGAACAAGAATGAACCATATACGCAGAAAATAGATACACGGGATGGTATAAGGATGCATTTAGGACTCAGGGAACAGGCATCAGGCTCTGCTCAGTGTTCATTTGATACTGTCAGAGAAATGGTTCAGGACATAGTCAGAAGTGGGGTGTGTgacttgaatGCTGATGTAACACTTCTATCTGAGAGAGGAAATGGTGGAGACAGAGTAGTTAGTTTGTGCTTACATTGGGTACACAAAACCGTAGGAGAAAGCGGGACAGTTAGATTGATCAGAACTGTATGCAAGGCAGTGCAGGAAAGTGGCTGTGATAAAAGTGGAAAACCAGTGCAATTCAAGACAGTTCTGTTAGGCAAggataaatctgaatttgtgccACTGGTATTATTCAAAGGTTACAGAATCAACATTACTCTTTGCAGTGCAGCTGGGTTTTTTTACCTGCTCTCTGATTTGCTGGAATTCAGTAGAGAaattcagcatgaaaacaaattggtggAGCTGTTTTTGCTGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37165 lncRNA downstream 4326 48833539 ~ 48833822 (-) True G29694
TU37146 lncRNA downstream 75851 48761972 ~ 48762297 (-) True G29676
TU37143 lncRNA downstream 105557 48732260 ~ 48732591 (-) True G29673
TU37126 lncRNA downstream 184214 48565667 ~ 48653934 (-) True G29656
TU37077 lncRNA downstream 419245 48415003 ~ 48418903 (-) False AMCG00008255
TU37166 lncRNA upstream 3006 48842351 ~ 48842613 (-) True G29695
TU37192 lncRNA upstream 84768 48924113 ~ 48940099 (-) True G29717
TU37201 lncRNA upstream 127693 48967038 ~ 48967343 (-) True G29723
TU37266 lncRNA upstream 343423 49182768 ~ 49253244 (-) True AMCG00008264
TU37301 lncRNA upstream 489228 49328573 ~ 49328840 (-) True G29806
AMCG00008257 mRNA downstream 140314 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008258 mRNA downstream 194206 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008255 mRNA downstream 419215 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008256 mRNA downstream 546705 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008254 mRNA downstream 635686 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008259 mRNA upstream 20810 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008261 mRNA upstream 304828 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008264 mRNA upstream 336380 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008265 mRNA upstream 430275 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008266 mRNA upstream 460188 49299533 ~ 49324003 (-) True AMCG00008266
TU37036 other downstream 554935 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 713466 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 919686 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2356250 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 2783802 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 956626 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 1214480 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1434393 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1684642 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile