RNA id: AMCG00008261


Basic Information

Item Value
RNA id AMCG00008261
length 282
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00008261
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49144173 ~ 49169545 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCACCACCCTCATGAACTCCTCCTCCGTGAAGCCCATGGGTGATCGGGAGGCTATAAAAAGAATAGCCTTTGAGTTGGTCGAGACAAAGGCCAAAGAAGGGGTTATATACGTAGAAACAAGagGTGACCTGACACCAGATGAAGTGGTTAATCTGGTTAACCAGGGCCTGAAGGAAGGAGAGGCAGCTTTCAACATCAAAGCCAGGTCCATTCTGTGCTGCATGCGTCACATGCCAACACCGTGCTGCGGGTACCACATTCAGGCTATGATCACATGA

Function

GO:

id name namespace
GO:0046128 purine ribonucleoside metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0019239 deaminase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37201 lncRNA downstream 176830 48967038 ~ 48967343 (-) True G29723
TU37192 lncRNA downstream 204074 48924113 ~ 48940099 (-) True G29717
TU37166 lncRNA downstream 301560 48842351 ~ 48842613 (-) True G29695
TU37165 lncRNA downstream 310351 48833539 ~ 48833822 (-) True G29694
TU37146 lncRNA downstream 381876 48761972 ~ 48762297 (-) True G29676
TU37266 lncRNA upstream 13223 49182768 ~ 49253244 (-) True AMCG00008264
TU37301 lncRNA upstream 159028 49328573 ~ 49328840 (-) True G29806
TU37324 lncRNA upstream 230624 49400169 ~ 49400479 (-) True G29825
TU37325 lncRNA upstream 231105 49400650 ~ 49400872 (-) True G29826
TU37326 lncRNA upstream 232504 49402049 ~ 49402258 (-) True G29827
AMCG00008259 mRNA downstream 282569 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008260 mRNA downstream 304828 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008257 mRNA downstream 446339 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008258 mRNA downstream 500231 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008255 mRNA downstream 725240 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008264 mRNA upstream 6180 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008265 mRNA upstream 100075 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008266 mRNA upstream 129988 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008267 mRNA upstream 175943 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008269 mRNA upstream 243847 49413392 ~ 49415125 (-) True AMCG00008269
TU37036 other downstream 860960 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1019491 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1225711 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2662275 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3089827 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 626426 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 884280 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 1104193 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1354442 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044151 True 2321 mRNA 0.40 11 NC_007134.7 25946448 ~ 25976656 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_09439380_09449840.mRNA True 1005 mRNA 0.46 8 CI01000001 9439237 ~ 9449840 (-)
tiger barb (Puntius tetrazona) TU233407 True 1450 lncRNA 0.37 2 NC_056721.1 14627590 ~ 14629198 (+)