RNA id: TU37226


Basic Information

Item Value
RNA id TU37226
length 2609
RNA type TUCP
GC content 0.37
exon number 5
gene id AMCG00008263
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49163816 ~ 49171017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaaaatttgggaacatttaaaaatagactggataggatccttggatcaggtggttattaatggacaccaaatgagtacgatgggtcgaatggcctcctctcgtttgtaaactttcttatgtttaccctggttaaggatgtctgttaagtaaattatacataataGTATATGCAAAAAGTAATGTTTGCAGTTAcgaatctgcagaaagagtaataaattaagggagccacactgtgccgtttaaaatacatatatactagcacaaattatgatgataataataacaatacatatttgctatttagtattattgttgcacatggaaacgtattcttatgggaacgtgtttgtctgaatataatgttgtctatacatgtttagctcttcctaacaTCTCTTAatagaaacatgtatttattacactgtttacaatcatgtaaagcagaaagaataaaatagacaaaagTCCTTTCCTCATCAGGCtatatcgctcgtagtgttgttctctgaaacacaaaccaaacccacaatcgctctgctcctcctataacagggacggacttcacaacggcctggttttacaaaaaaagctctgggacgcgtccggcacggcatggcacggacgtttaagccagtggaactgaggcattagttattaatgcacaccaaatgagcatgatgggtcaaatggcctcctctcgtttataaactttcttatgatctttaggtgatgtgaaacatgattttgcatattgaaacaataaaaaaagaatctgCACGTTATCTtgcattatgtatattttgttattccaagctaAATTCtgagtatatataaaaaatattcaaGCGATTTCCTTTCAAAAGATACCATCCATATGCATGAGTTATGGGCTTTTGAAATAGAGCTGGTCCTTTTAGAAGGAAATTCCCATTTTTGCCTGTCAGCTTAAGAGGTTAAGTTTAACATTGAATAGATTTTATGATAGGTTGCAAAAGTTTCGGTATAAGCTACTTAATAACTTTCAATTAATGGTGTCTACAGGAAGCAGTCAGAAGTGGAATCCACAGAACTGTTCATGCAGGAGAGGTTGGGCCCCCTTCTGTTGTAAAAGAGgcaGTAGAGATTCTGAAAGCTGAGAGAATTGGCCATGGCTACCACACAATAGATGACCAAGAGCTTTATcaacagctgctgcagcagaaCATGCATTTTGAGGTCTGTCCAATATCCAGTAAATACACAGGAGCCTGCCCTGCAGATTTCTCAAAGCATCCTGCTATCAGgtTTAAAGAAGACAAAGCCAACTACTCCCTGAACACAGATGACCCTTTGATATTTGACTCCACCCTGGACACAGACTACAAAACAGCCAAGACCTACATGGGCTTCACGGAGGAGGAGTTCATGAGGGTGaATCTAAATGCTGCTCGCTCAAGTTTCTTGCCcgagaaggaaaagaaagaccTTGTGAACAGCCTGTACGAGGCATACGGAATGATCCAGAAGACTGAACTCTGAAGAAAGTTATGATTTTGCATTATAGAACATGCAGTAGAAAACAATCCAGGGGCTCCACACTTACTTCCTTTACTGTACACTTAGGGAAGGGGAAAGgaatacaattttgaatttgaggTGGCTCATAAAAGcttaagaaaatgtatctgCATTGTCTCTTTCTATAGTTATAGTTGTGCAGCCGTGCATATTGAGTGGGTGTTGACTAACAGCTTTTTTGGGAGCTGCAACTACAGAGAAGTCTGCACTGCAGAGATAAACTGGGGTACCTTCTGTACATATACGCCTAGCAGGGTCGGATTGGGACTTTGTGCCTATTTGTGCCTATTTATCAACTACAGAAAGACTAgcaagtacaaaaaaaacatgtatatcaAAATCTCTCTGTTGCAAGATAATCATATAGATTTTGTACACTTCTGCAATAACTATAGGAAGGACAGTATTATACAAATGTCTGTATGTTATGTCACATTTAAGCattggaaaaacacattaatagcAATAAATAAGTATACAAATTTTATAAGAATAagagttttgcattttgatttcaaTTTATAATGCACCAGCCTAGATTAGGTTCAAAGAGCAGTCTCGGGTTTCTCCAGGTGCTCTTAATTGCAAAGCAACACAGGgctttatatgaaatgtatatgcTCTGATATGCTGTCTGAACACTAATAATTTGAATTGGAGTGATGCCTACATCCCTCTTCTATGTATACTATCTATGGAACAAAAACTAttacgttttattttttattttatcttaagTATTAAATCAGGACATGGTTGTGATCCAGCTTTAGGTTAACCTACAGCCATCTTGCAAGCTTCCTGTGCTAATTGAAGTGCTAATTATATATCTGCACAATAGGTGGTGCTCTTGGCCCACGTTGAAAAAGATTTCTATAAAATTGAGAATATGCTATTTAAAATACTCTTATTGCTGGGAAGTTAAATTGTCTGAAAgacttattgtttttgttgaatgtagattagaaatgtatttaatgaaattaaaagaggtttcaatttgaatatattttgtatttaatttagaacctctctttttttcccttcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37231 lncRNA upstream 16591 49139140 ~ 49147225 (+) True G29748
TU37222 lncRNA upstream 58372 49105213 ~ 49105444 (+) True G29742
TU37200 lncRNA upstream 196596 48966956 ~ 48967220 (+) True G29722
TU37163 lncRNA upstream 343122 48820475 ~ 48820694 (+) True G29692
TU37147 lncRNA upstream 359911 48762685 ~ 48803905 (+) True G29677
TU37252 lncRNA downstream 117229 49288246 ~ 49295359 (+) True AMCG00008270
TU37309 lncRNA downstream 173021 49344038 ~ 49348022 (+) True G29813
TU37320 lncRNA downstream 197628 49368645 ~ 49379374 (+) False G29823
TU37321 lncRNA downstream 197628 49368645 ~ 49379374 (+) True G29823
TU37354 lncRNA downstream 344467 49515484 ~ 49938346 (+) True G29848
AMCG00008262 mRNA upstream 223721 48923864 ~ 48940095 (+) True AMCG00008262
AMCG00008250 mRNA upstream 689284 48462293 ~ 48474532 (+) True AMCG00008250
AMCG00008253 mRNA upstream 787745 48347747 ~ 48376071 (+) True AMCG00008253
AMCG00008252 mRNA upstream 837678 48292639 ~ 48326138 (+) True AMCG00008252
AMCG00008251 mRNA upstream 888468 48235687 ~ 48275348 (+) True AMCG00008251
AMCG00008270 mRNA downstream 118224 49289241 ~ 49292055 (+) False AMCG00008270
AMCG00008271 mRNA downstream 233914 49404931 ~ 49407073 (+) False AMCG00008271
AMCG00008272 mRNA downstream 298272 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008280 mRNA downstream 378889 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008281 mRNA downstream 416050 49587067 ~ 49596793 (+) True AMCG00008281
TU36912 other upstream 1247559 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 1273133 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 1273133 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 1448279 47664517 ~ 47715537 (+) False AMCG00008238
TU36868 other upstream 1492395 47627296 ~ 47671421 (+) False AMCG00008232
TU37330 other downstream 233839 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 1180510 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 2255564 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 2929745 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 3207312 52378329 ~ 52378776 (+) True G30299

Expression Profile