RNA id: AMCG00008265


Basic Information

Item Value
RNA id AMCG00008265
length 678
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00008265
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49269620 ~ 49280998 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAAGAAAATGGCTTTACAGATGTTGGGCCTTTGGAGCTGCCACCAGCAGTTGGTAATGGGTTCCCCCTGCCTCCACCTCCTATCTACTCCTGCACCCTGACACCTGAGCTGGTGGCCAAGGCCAGGGAGGAGCTTCAGGAGAAGCCAGAGTGGCGTCTGCGAGACGTGCAGGCTCTTAGAGACATGGTGCTGAAGGAGCAGCCCAATCTCCGCACCCGCCTGGATGACGCCTTCCTGCTCCGCTTCCTCCGTGCCCGCAAGTTCGACTACGACCGggccctgcagctgctgctcaaCTACCATGCAAGCCGCCGCACCTGGCCCGAGGTGTTCCAAGACCTGCGGCCCTCCACCGTGAAGCACGTGCTGGACTCTGGCTTCCTCACCGTACTGCCCCACCCAGACCCACAGGGCCGATATGTTTTGTGTCTCCAGCCTGatgcCAAGGAAGAAAAATTAGAGAAAATCTGTGACCTGTTGAACGAGGCCAACGTGCCGCCCCCTCAGGCCAACGTGCCGCCAACTGAGGCCAACGTGCCACCCACTGAGGCCAATGTGCAGCCTACTGAGGCCAACCGGACGCGGCCAGGACTGGAACTGGTACCTatttcttttccctttctttggGACCTCTGGTTTGGCATTGGGAgcggccgggatcgggacctctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37266 lncRNA downstream 16376 49182768 ~ 49253244 (-) True AMCG00008264
TU37201 lncRNA downstream 302277 48967038 ~ 48967343 (-) True G29723
TU37192 lncRNA downstream 329521 48924113 ~ 48940099 (-) True G29717
TU37166 lncRNA downstream 427007 48842351 ~ 48842613 (-) True G29695
TU37165 lncRNA downstream 435798 48833539 ~ 48833822 (-) True G29694
TU37301 lncRNA upstream 47575 49328573 ~ 49328840 (-) True G29806
TU37324 lncRNA upstream 119171 49400169 ~ 49400479 (-) True G29825
TU37325 lncRNA upstream 119652 49400650 ~ 49400872 (-) True G29826
TU37326 lncRNA upstream 121051 49402049 ~ 49402258 (-) True G29827
TU37338 lncRNA upstream 130358 49411356 ~ 49417214 (-) True G29834
AMCG00008264 mRNA downstream 17721 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008261 mRNA downstream 100075 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008259 mRNA downstream 408016 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008260 mRNA downstream 430275 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008257 mRNA downstream 571786 48674528 ~ 48697834 (-) True AMCG00008257
AMCG00008266 mRNA upstream 18535 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008267 mRNA upstream 64490 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008269 mRNA upstream 132394 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008268 mRNA upstream 197335 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008273 mRNA upstream 216402 49497400 ~ 49537179 (-) False AMCG00008273
TU37036 other downstream 986407 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1144938 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1351158 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2787722 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3215274 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 514973 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 772827 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 992740 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1242989 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile