RNA id: AMCG00008266


Basic Information

Item Value
RNA id AMCG00008266
length 3446
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00008266
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49299533 ~ 49324003 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCTGCGCAACTGGCAGACTGCTTCTTACTTGACAGGGAAGAAGGAGGTGTATTCAACGCAGTCCCTAAGCTgaactgttttgtttctttattttaagttaacaGCGTCGAGAAAAGGTCGGCGAAAGAATTTCCACTGTATACAAGAAAATCTGTAGAGACGTCCGGGGATCTGTAACTGCACGAAAGAAAGAGTGGCTTTGGAAGGACAGTAGATCTGAACAGCAAAAGACGATGGGAGCTGTTTTAGGGGCCTGCTCTGTAGCGAGCTGGATTCCGTGCCTGTGTAGCAGTGCCACATGCTTGCTGTGCCGCTGCTGCCCCAACAGTAAGAATTCTACAGTGACGCGCTTTATTTACGCTTTCATTTTACTGCTGGGGACCATCGTGGCCTGCATCATGCTGGCTCCAGGAGTTGAGCAGCATCTGAAAAAGATACCAGGATTCTGTGAAGGGGGAGCTGGATCGTCTATCCCAGGGATTCATGGCTCTGTGAACTGTGATGTGTTTGTCGGTTTTAAAGCAGTCTACCGTATTTGTTTCGGGATGAGCATCTGTTTCTTTGTCTTCTCTCTGCTCATGATTAATGTCAAAAACAGCCGAGATCCCCGAGCAACTATTCACAATGGgttttggtttttaaaaattGCGGCCATAGTAGCTGTCACAGTGGGTGCCTTTTATATCCCAGAAGGACCTTTCACTCGCACCTGGTTTGTTCTGGGAACTTTTTGCGCCTTTTGCTTCATCCTGATTCAACTGGTGTTCCTGGTGGATTTTGCCCACTCATGGAATGAGTCCTGGGTTGACAAAATGGAAGAAGGGCGTTCCCGGTGTTGGTATGCagCACTGCTGTCAGTCACAGGAATGAACTACATCCTGTCCTTCACAGCCATTGTTCTGTTCTTTGTCTTCTACACCCATCCTGAGGGTTGCGCGCTGAACAAATTCTTCATCAGTTTCAACATGCTCCTCTGCATTGCTGCTTCAGTCATCTCTGTGCTCCCTAAAGTACAGGAAGCCCAGCCACACTCCGGACTGCTGCAGTCCTCCATCATTACCCTGTACACAATGTACCTTACCTGGTCTGCCATGACCAATGAGCCCGATCGGAGGTGCAACCCCAGTTTGCTCAGCATCTTTGAGCAGATCCACGCTCCCACAGTTATTCCAGAGAATGAGACGGCCAACCCTGCCTACGAGGAACCAAACCCAAGCCCTTCTATGCAGTGGTGGGATGCCCAGAGCATTGTGGGACTTGCCATCTTCATCCTTTGCATTCTGTATTCCAGCATTCGCTCATCCAACAACAGCCAGGTGAACAAGCTGACTCTATCTTCCCATGACTCGGCCATCCTGGACGACTCGTCACCTGGGAGTCCCGGAGACATGGAGGATGGGGATGGGCCGAGACGTGTGGAGGATAACGAGAAGGACTCTGTCCAGTACAGTTACTCTTTCTTCCATTTCATGCTGTGTCTGGCCTCTCTATACATCATGATGACCCTCACAAACTGGTATAGCCCCGATGCGGACTTCAGCACAATGACAAGCAAATGGCCCGCAGTCTGGGTGAAGATGACATCGAGCTGGGTGTGTCTGCTCCTGTATGTATGGACCTTAATTGCACCCATCGTGCTCACTAACAGAGATTTTAACTGAAACAGCTGGTAGGTTGTTCTCAGtatataattttcttaaaacaaaaagcaaaaaaaatgtaattcctttttgttgttatttttcatgaacATGTGCTCGGACTGGTTCTTGtccacatttttctattttgtaaacATTGCCATGTTTGCCTAGATGCACAACCAGTGATACACTTGGGACTGGATTCCTTTAAGGTGACTGGATTTGACTGaattcatgtaattattttaagagcACTGAAATGTACTTGAGTGGATGACTATGTGCACTTTGCAACATCtgtataacattttcttaaaaccCTTTGCCTAAAGCAATTGTAAAAAGAAGGGTACTTCCTTTTAAATTGTGGAATTGACCAAATGGAGAGTATGCAAAGGCCTAAGGTCAAATACTGGGATGTACAGGCTACACTTGTGTACACGATTCACTAgagaatttaatttacaaatatttcataaCATAGTTTTTCAGACTTATTTCACGATTATTcacaataatatttaaagtttgcattttttatcaCATTTCCAATTGTTGCGTTTTGCAaacctaaaaaaacatttacttatttcatcACACCAATcgtaaatatattttcatctaAATTTGAGCTCTACTCTGTAAGTACTGACTTCCTAATAAAATAACCCAATTTATACAGCCATGAGAGCAATCAGTTCAGACATAATCTGATCGATCTTGTTTATCCCAGGACTTAACCCTAGGTTGCAGCCATGCTTTTCTAAGATTGCACAACAGGTAAAAAGTACAAGTTTCTTTTTAAGTAAGACCATAAACTTACTGAGTGAACTTCTGAGAACTGTAAGTTAATGCcttactattttgtttttgcacactttacttgtgtatatttttcatgtattaaaagcaaaagaaaataaattaagcaatcCTGAAGACAGTTTCAGGGTATAGTAGTGAGCTacatttaatggaaatgtaGATGCTTTTGCCAAATATTTGTAGACAATTTATACTGGAATCTATtagctttgtttatttgttgtgaGCTACAAGTTATGTACTGAACAGTGGAATGAAGCCTTGATGTCACCAATGTGATCAAACCACTCTTGAACAATATGTAAAACTCTTAAATACTTCCTCACATGCActaagaatgaaaaaaataaatacaacatttcttgAACAAATTGGATTGGTAGTGTTGACCTTTTACTTTTGTATACATCTTTCAATCTGCAGTCAGTATTACTGATAAATGGGAAGTAACATGGGCATAGGTATAAATAATACACTAGATGtgttaatgtacattttgtgagTGAGTAGCAGTTATCATAAACAATTtcatgaaataaattacaataagagcaagaatatacaatataccaTCTTAGCCAAAATGAGTAAATTTACATAAGACAGTACAACATACACTACAAGATCCTATTTAGGGATAGTAAAAGGCAGAAAAATTATCATAGTTGCATAAGTGCTGCATGCAGTGCACTCAAAGCAGACCATAGTATTGGACTGTTTGTGAAGCTGGTGGATAGATTTAGAATAGGTTATAAATTAGCCAATTATTACTGCAAGATAATGAAGACCTTGTCAGTATAGCTTTACATAGGAGAGGCCAAAAGTAAGAGACCACACATtagttttaatttccatttcagtttcttCAAAACTCTAAAACACTAAGAATTCTGTTTCACTTTCAAATAGTGTGTTTTCTTATTGTCCTGCCAATTggggtaaaaaacaaaaaaaagtaatttgtgttattttccag

Function

GO: NA

KEGG:

id description
K23544 SERINC1_3; serine incorporator 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37266 lncRNA downstream 46289 49182768 ~ 49253244 (-) True AMCG00008264
TU37201 lncRNA downstream 332190 48967038 ~ 48967343 (-) True G29723
TU37192 lncRNA downstream 359434 48924113 ~ 48940099 (-) True G29717
TU37166 lncRNA downstream 456920 48842351 ~ 48842613 (-) True G29695
TU37165 lncRNA downstream 465711 48833539 ~ 48833822 (-) True G29694
TU37301 lncRNA upstream 4570 49328573 ~ 49328840 (-) True G29806
TU37324 lncRNA upstream 76166 49400169 ~ 49400479 (-) True G29825
TU37325 lncRNA upstream 76647 49400650 ~ 49400872 (-) True G29826
TU37326 lncRNA upstream 78046 49402049 ~ 49402258 (-) True G29827
TU37338 lncRNA upstream 87353 49411356 ~ 49417214 (-) True G29834
AMCG00008265 mRNA downstream 18535 49269620 ~ 49280998 (-) True AMCG00008265
AMCG00008264 mRNA downstream 47634 49175725 ~ 49251899 (-) False AMCG00008264
AMCG00008261 mRNA downstream 129988 49144173 ~ 49169545 (-) True AMCG00008261
AMCG00008259 mRNA downstream 437929 48860155 ~ 48861604 (-) True AMCG00008259
AMCG00008260 mRNA downstream 460188 48838148 ~ 48839345 (-) True AMCG00008260
AMCG00008267 mRNA upstream 21485 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008269 mRNA upstream 89389 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008268 mRNA upstream 154330 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008273 mRNA upstream 173397 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008274 mRNA upstream 329567 49653570 ~ 49661750 (-) True AMCG00008274
TU37036 other downstream 1016320 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1174851 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1381071 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 2817635 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3245187 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 471968 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 729822 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 949735 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 1199984 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile