RNA id: TU37252


Basic Information

Item Value
RNA id TU37252
length 4246
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00008270
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49288246 ~ 49295359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacacagtattagtatggtgttcctaataatcctttaggtgagtgtagattgaGGTGCTCCGTGAACAAAGGGCGTAGTGCActgcaatgttttaaattggACTGCTGCTACCTTGTGACTACCAAGTTTAAAAATTGTATCGACAGTAtgccaaataaatgaaaattagCTTTCTCCTATCTGTCATTTCTATAATAGTTAGGACTATTTTTTGGttcatgtgaaaaaataaacactgtgcctaaaagtaacaaataaagaaaaacctgaTAACCCTAGCTGGCTAGGCAGTAAACTTCAGTGCAGCCTGCAGAGTACAGTTGCTGGGATCTgctaaatcttttttttgtataaatataggAAAGTGGAAACCCACTGATTACCCGTTTGTAGACAATGTCCGGGCTATATACCTCACCCTAGAGAAGCTGATTCAACCTGAGGAGACCCAGGTGAATGGCATTGTCATTCTCGCAGACTACAATGGGGTTGGCTTGACTCAGGCATCTAACCTGGGCCCCTTCCTCGCAAAGAAGGTTGTGGGTATTCTTCAGGATGGATTTCCAATTAGAATCAAGGCAGTCAATATAATAAACGAACCCAGGATTTTCAAGGGAATTTTTGCAATCATAAAGCCTTTTCTCAAGGAGAAGATGGCAGAAAGGTACCTTCTCCATGGCTCCGACCTGAACTCACTGCACAAGACCATCCCTTGTTCAGTGCTTCCTGAGGAGTATGGAGGCATGGCCGGGCAACTGGAGACAACAGTCTGGTCCCAAGCACTGTTGGACTCTGAGGAGGAGTTTGTTGTGGAGTTCTGCCAACCTGACCCATTGGAGGGCCTGGACCTCTCTGACTCGCTGCTATTTGCAGGCGAACATGCCAGCGCACAGTGCGATGACTACAGGGGAGTGCGCTCCCAGTTGTACTATTGTTACTGACATGCTCTGCTACATACACACAGGGCGCTACTGTTCTTGTGTCCAAACACATACAGCACCTTATCTTCTCGCAATTCAAGTGTTACGCTTCTTAATTGGATTAGCGGTGGCAGCCCTTTTCACAGATCAAGATCAAAGGGCTTTGTACCCTAATGGTGGTTAGTTGATCACTGAAGACAGCCACCACTAGTAAACAACATTTTCCTAGCCTTATATTGTTAAACAGTATACCCTCAAAAACCAATACAACTTTGCATATGTCTTAAGAACACACCATAAAAAAACTAGGATATAACTGTTGATGCTTATATAACTGTTGATGCTTATATAGCTGCTATGTTAGGCCAGACAGATCTGGATGATTCTGCACCTGCACAAAACATATCAAGTGCTTCAAGTTGGTGATACCAGTTAAGATGAAAAAGTGACACAACTGGAAAACTTTCAGTAAGAACaggttttgttgtgttgttttaagcatttcttcttacaaaatgttaaaatgacagcCAAATTAATTGATCAACTTATTGTTGACTAGGCCCGTCTTTATATTgtatcaacatttatttttatatatatatatatatatatatatatacacaaatagtGTTGTTGACATACTGTACCCAAGGTGTGTAATGTTTTTACAGAACAGTACTACTCCACTGCAATAACAGATATGCATACTTTATGGAAAAAAAGGAagtagtcttttttttattgagaatACATCATTCTTCTAAATAGGAGCTTCATATGAAGAATGACTGTAAATGAGGTTAGATCACTAAAATGGGTCATAAAAAAGGCATTCACAACTTGTGAAACAGACATGCtttatgttatttttgaatTCCGCATCTCCTGAAggattgaagaaaaaacaaactactcTGTATTCGTGTAACAATCCTGAAGCTATGTCCCAGATGAACCAGCAAACAACCTATGCAGCCTTTATAATTGCCTGAGTGAGAATTACAGTAAAAGCAAATGGTgaattttttctcttttgaatCAGTCGGTCAAGAGGGAAAATGTAACCTCAATTGGATTTGGTTAAAATCTATTCTTAAAGTAAATCCGTAGCTCCAAGAGACCCAAGAAGCTTATTTTGTCTGCTGCATTTCAGCTTTGACAACTCTAACCCACTGTATTTTCAGCTATAATAGTAGTGTGCTCTTGTAATCAAAGAGTATTGAATTAAGTGGATTTCAGTTCAGTGTCCCTGACTCACAGAGGCTAATGAATGTTATAGTTATGGCAAAAAAAAAGGCTTGGGTCCTCATTCATTCACATTACTTTCttaggagggaaaaaaaattaaacattcagtaaataatacaatccaTTTCCTAATAGTTTAGACTATGGTGAGAAATTATTTTCAGTGCTACAAAATTCAGAGAGAGACTGGGAAAGATTGAAGCACAGTGATTAATTTCTTCCAGCAGTACTACTTAATCCTAAGGAATTGTGTGACAATGGGTGTTTTCATTCACTGACCTCTTGGGGCAGCATTTTGCACTAAATGTTGCTTGTAAGAGTACTTGAATGCCAGGATAATATTAGAACataggaaagtttacaaacgagaggagaccattcgacccatcatgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccaaattttcaggtTCAATCACTGGGGagattgttccagattgtgacaactctgtgtgaagaagtgtctcctgttttccgtcttgaatgcctcgaagcccaatttccatttgtgtccgtgggtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgactttgaagacttgaatcaagtccacACGTAGTCTcctccagggtgaaaaggttcagttccttcagtctctctgagtaggacattcccttcaaacctgcaataagtctggttgctcgcctctaaactgcctctagagcagcgatatccttcttgaaatgtggtgcccagaactgtacacagtatcccagatgaggtctaactagtgcattgtacagtcttaatatcacttcccttgttttaaattctacacttttgacaatataccctagtattctgtttgccttttttattgcttccccatattgtttggatggggagagtctacatagactcctagatctttctcatgcattacttcatctagttctattcctcccatagtgtaattatagtggacatttttgttacctgcatgtaataccttggcacttgtccacattgaatttcatctgccaggtgttggcccacaactgaatattatccaagtccctttgaatagcatGTGAtagtatctgctgagccacctattttagtatcatctgcaaatttgacaagtttgctaactatcccagagtccagatcattaatatagattagaaaaagcaaaggccctagtactgatccccatggaactccactaacaacctcactccagttagaagcaactcctctaaattacaccctctgtttcctatacattaatcagttcataatccatctacttacattaccctgaatacccacagcttccaatttgaggatcagtctttggtgtggaaccttatctaaagctttctgaaaatctaagtatatcatatcatatgctttcacatgatttaCAGCTGCAGATGCATGttaaaaaactacaataaattagtaagacatgatctttcattaagatgctcctctactttctgtctaatcattttctccaacattttacaggtgatgcaggtaagactgattggtctgtaatttcctggctcagttttatcccttcttgtggattggtgtgacatttggcgtcttccagtcagttggcagtgtcttttggaatatttgagttagcggcctaaaaataatttctctaatttctttaagtactgttggacatataccatctggcccaggtgatttgtttgtttttaattctgctagtccctttagtacctcctcctcatttatcctgatttcTCTTAGgcttgactggactgattgttaaccattttgcattttatcagttttttcttttgtaaaaacctctgtgaaatatttgccacatcttattcgttttctaagatacctcaatttttcccctttgtttcacttcctcctttattgacctcttgctgttgtagtatttaaaaagtattttgcatacttctattaaagcATTTGGGACAATTTTTTTTGGTCCTCGATTTGGtaagttttggtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37229 lncRNA upstream 96030 49137516 ~ 49192216 (+) True G29747
TU37231 lncRNA upstream 141021 49139140 ~ 49147225 (+) True G29748
TU37222 lncRNA upstream 182802 49105213 ~ 49105444 (+) True G29742
TU37200 lncRNA upstream 321026 48966956 ~ 48967220 (+) True G29722
TU37163 lncRNA upstream 467552 48820475 ~ 48820694 (+) True G29692
TU37309 lncRNA downstream 48679 49344038 ~ 49348022 (+) True G29813
TU37320 lncRNA downstream 73286 49368645 ~ 49379374 (+) False G29823
TU37321 lncRNA downstream 73286 49368645 ~ 49379374 (+) True G29823
TU37354 lncRNA downstream 220125 49515484 ~ 49938346 (+) True G29848
TU37362 lncRNA downstream 249003 49544362 ~ 49544731 (+) True G29853
AMCG00008263 mRNA upstream 118318 49165357 ~ 49169928 (+) False AMCG00008263
AMCG00008262 mRNA upstream 348151 48923864 ~ 48940095 (+) True AMCG00008262
AMCG00008250 mRNA upstream 813714 48462293 ~ 48474532 (+) True AMCG00008250
AMCG00008253 mRNA upstream 912175 48347747 ~ 48376071 (+) True AMCG00008253
AMCG00008252 mRNA upstream 962108 48292639 ~ 48326138 (+) True AMCG00008252
AMCG00008271 mRNA downstream 109572 49404931 ~ 49407073 (+) False AMCG00008271
AMCG00008272 mRNA downstream 173930 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008280 mRNA downstream 254547 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008281 mRNA downstream 291708 49587067 ~ 49596793 (+) True AMCG00008281
AMCG00008279 mRNA downstream 546758 49842117 ~ 49858576 (+) False AMCG00008279
TU37226 other upstream 117229 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 1371989 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 1397563 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 1397563 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 1572709 47664517 ~ 47715537 (+) False AMCG00008238
TU37330 other downstream 109497 49404856 ~ 49418746 (+) True AMCG00008271
TU37559 other downstream 1056168 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 2131222 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 2805403 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 3082970 52378329 ~ 52378776 (+) True G30299

Expression Profile