RNA id: TU37330



Basic Information


Item Value
RNA id TU37330
length 786
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00008271
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49404856 ~ 49418746 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGCCGATTGGCTGGGCAGGGAAGTATATCCGGTATTATATCCGAAACACACCGCCATTACGCATAGGAGACCAAATGGAGCAGTTTGACAAGCGTCTTGCCGAAGAGGTTAGCAGGTACAAACATTTGTACGACTCATCCtctaaaaattataaaaacacagaggTCGTGATTAATTCTTGGAGGGAAATTGGAAAAACCGTGGGCGAAGACCCGGGAGTCTGCATAAAAAGATGTAAGGCAATGagagagaagtttaaaaaaaaataaaaaatgaagtgcAATAGTGGAGACGTTGGGCCCGGTGGACAGAAAGTACCGGCGTATTTTTTTATGCTGTCTTGGCTTAATCGATTCGTAAAGCATCGAGAGACGGAGACCAATTTCGCCTTCAGAAATGATTTTGAGTTAGATGAAAGCACACCAACACCCAGTCCCGAAGAAGGGCAATGTCTGGACACCCTCTGGGCTACACTACAAATTGAGGAGCTGGATGACATAAGatgcCAAGGAAGAAAAATTGGAGAAAATCTGTGGTAAAGAAGGGACATTTTTATGATGCCCCTACAGTCCTGTCGAACGAGGCCAACGTGCCGCCCCCTCAGGCCAACGTGCCGCCCCCTCAGGCCAACGTGCCGCCCCCTCAGGTCAACATGCCGCCCCCTCAGGCCAACGTGCCGCCCACTGAGGCCAACGTTCCACCCTGCAAGGACAATTTGCCTATGGCTGTTGATAATGCTgataaatatgaacaaataaacTATGCAAATAAATTCGCCGAAAGgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37320 lncRNA upstream 25482 49368645 ~ 49379374 (+) False G29823
TU37321 lncRNA upstream 25482 49368645 ~ 49379374 (+) True G29823
TU37309 lncRNA upstream 56834 49344038 ~ 49348022 (+) True G29813
TU37252 lncRNA upstream 109497 49288246 ~ 49295359 (+) True AMCG00008270
TU37229 lncRNA upstream 212640 49137516 ~ 49192216 (+) True G29747
TU37354 lncRNA downstream 96738 49515484 ~ 49938346 (+) True G29848
TU37362 lncRNA downstream 125616 49544362 ~ 49544731 (+) True G29853
TU37386 lncRNA downstream 377698 49796444 ~ 49797983 (+) True G29877
TU37395 lncRNA downstream 419259 49838005 ~ 49839324 (+) True G29883
TU37396 lncRNA downstream 420766 49839512 ~ 49857994 (+) True AMCG00008279
AMCG00008270 mRNA upstream 112801 49289241 ~ 49292055 (+) False AMCG00008270
AMCG00008263 mRNA upstream 234928 49165357 ~ 49169928 (+) False AMCG00008263
AMCG00008262 mRNA upstream 464761 48923864 ~ 48940095 (+) True AMCG00008262
AMCG00008250 mRNA upstream 930324 48462293 ~ 48474532 (+) True AMCG00008250
AMCG00008253 mRNA upstream 1028785 48347747 ~ 48376071 (+) True AMCG00008253
AMCG00008272 mRNA downstream 50543 49469289 ~ 49471615 (+) True AMCG00008272
AMCG00008280 mRNA downstream 131160 49549906 ~ 49560080 (+) True AMCG00008280
AMCG00008281 mRNA downstream 168321 49587067 ~ 49596793 (+) True AMCG00008281
AMCG00008279 mRNA downstream 423371 49842117 ~ 49858576 (+) False AMCG00008279
AMCG00008283 mRNA downstream 461233 49879979 ~ 49881352 (+) True AMCG00008283
TU37226 other upstream 233839 49163816 ~ 49171017 (+) True AMCG00008263
TU36912 other upstream 1488599 47913868 ~ 47916257 (+) False AMCG00008241
TU36905 other upstream 1514173 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other upstream 1514173 47889027 ~ 47890683 (+) False AMCG00008242
TU36882 other upstream 1689319 47664517 ~ 47715537 (+) False AMCG00008238
TU37559 other downstream 932781 50351527 ~ 50352794 (+) False AMCG00008288
TU37728 other downstream 2007835 51426581 ~ 51428055 (+) True G30166
TU37800 other downstream 2682016 52100762 ~ 52101524 (+) True G30232
TU37873 other downstream 2959583 52378329 ~ 52378776 (+) True G30299
TU37877 other downstream 2962595 52381341 ~ 52382418 (+) True G30300

Expression Profile