RNA id: AMCG00008274


Basic Information

Item Value
RNA id AMCG00008274
length 1197
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00008274
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49653570 ~ 49661750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAGCAGTACAGTTATCCTTCAGGTGGAATTAAACTCCACCATCAGCGAGGTGCTGAAGAAGATGCCCCAAAACTCCCTCGAAGTACAGGTTGTCACTATTCTGCTGGCCCTGTTGATATGTGGTATTGGCATTGCGGGAAACATCATGGTAGTGTTAGTGGTACTTCGAACCAAGCATATGATGACCCCAACCAACTGCTACCTGGTAAGCTTGGCCATAGCTGACCTGATTGTCCTCCTCGCTGCAGGACTGCCCAATATCTCAGAAGTCGTGGCTTCCTGGGTTTATGGCTACGCCGGCTGCTTGTGCATCACTTACCTGCAGTACCTGGGGATCAACGTTTCTTCTTGCTGCATCACAGCCTTTACCATTGAACGTTACATTGCTATCTGCCACTCAATCAAAGCCCAATTTATCTGCACTGTATCCCGTGCGAAAAAGATCATCGCCTGCGTTTGGATTTTTACCTCTGTCTACTGTATTATGTGGTTCTTCTTGGTGGACACCAATGAGACTGAATATGCTGATGGCGTGGTGGTCAAGTGTGGCTATCGGGTGTCCAGAAACCTCTACACGCCCATATACTTTCTAGACTTCACGTTGTTTTATGTTATACCGCTCATTTTGGCGACGGTGCTGTATGGTCTCATTGCCAGGATTTTATTCATGAATCCACTGCCGATTAATCCTAATGACAGAATAGGCGACGATTCTGTTCACCAGGGTCGATCCAACAACACTGTCAATCTGTCCTGCAAACCCAACAAGGGCGCCGTGTCATCGAGGAAACAGGTCACGAAAATGCTGGCCGTGGTGGTGATTCTTTTCGCTCTGCTGTGGATGCCTTACCGGACCCTGGTGGTGGTGAACTCCTTCATGAACCCCCCTTACCTCAACACCTGGTTTGTGCTCTTCTGCCGGATGTGCATCTACACAAACAGCGCCATCAACTCCATTATCTACAACCTGATGTCGCAGAAGTTCCGCGCCGCCTTTAAGAAGCTGTACAAGTGCAAGCGGCAAAGGCCAGAGAAAGTGACCAAGTACAACATGCCCGTCTACTACAGTGTCATAAAGGATTCCTCCCACAACAGTCTGGAACACGACGTCACCGAGCAGGAAGATATAAATGGTTACCCCCTCTTCACAGGCAAATGCAGAGACACCAACAAAATCTTTAGCGTTGCTTGA

Function

GO: NA

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37426 lncRNA downstream 31610 49592278 ~ 49621960 (-) True G29904
TU37432 lncRNA downstream 39150 49610123 ~ 49614420 (-) True G29908
TU37418 lncRNA downstream 64765 49515484 ~ 49588805 (-) True G29899
TU37419 lncRNA downstream 64765 49585886 ~ 49588805 (-) False G29899
TU37411 lncRNA downstream 116289 49524742 ~ 49537281 (-) True AMCG00008273
TU37450 lncRNA upstream 124581 49786331 ~ 49787892 (-) True G29926
TU37452 lncRNA upstream 134221 49795971 ~ 49905089 (-) False G29928
TU37489 lncRNA upstream 312676 49974426 ~ 49974646 (-) True G29957
TU37522 lncRNA upstream 463890 50125640 ~ 50126131 (-) True G29987
TU37538 lncRNA upstream 523282 50185032 ~ 50185277 (-) True G30003
AMCG00008273 mRNA downstream 116391 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008268 mRNA downstream 174493 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008269 mRNA downstream 238445 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008267 mRNA downstream 292059 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008266 mRNA downstream 329567 49299533 ~ 49324003 (-) True AMCG00008266
AMCG00008275 mRNA upstream 48116 49709866 ~ 49711609 (-) True AMCG00008275
AMCG00008277 mRNA upstream 77305 49739055 ~ 49752628 (-) True AMCG00008277
AMCG00008276 mRNA upstream 111364 49773114 ~ 49775968 (-) True AMCG00008276
AMCG00008278 mRNA upstream 176446 49838196 ~ 49840087 (-) True AMCG00008278
AMCG00008282 mRNA upstream 285261 49947011 ~ 49987575 (-) True AMCG00008282
TU37036 other downstream 1370357 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1528888 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1735108 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 3171672 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3599224 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 134221 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 392075 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 611988 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 862237 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile