RNA id: AMCG00008275


Basic Information

Item Value
RNA id AMCG00008275
length 1383
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00008275
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49709866 ~ 49711609 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCATCCCAATGGCCTTCCAGCCATAAAGAACGCTCTGGAGTTTTGTTGGCGTGCTTATTCCAAACCTGCCCCTGAGAGCTCCACAGAACTTCTGactttgctgctgttgtgtctCGTCATTGCTGTTGTTTCTGGTGGCCTCCTATTCCACTGGATGTTTCAAACTCTGAATTATGAATACTTTGCATCCAGTGTAATGGCAGGGATATACAGTATGAGTgccttcctccttctctctctagTACACCCAGTTCGGTGCATGTTTACTATAATATTGCCCACTTTGGGCACTGGTCAAGGCCTCAGGCTAATTATGTCCTCCTGTGTTATGCTTTTGGTCCTTAATGTTATCCCCAACATAACTGCCAATATCAGTGTGGTCACACATGTCTTGGAATGCACTTCGGGGACCCTGACTGAGAGTCTCATCAATTCCACGCAGCTGGTGATTGAAGCGAAACATGATCTAATCCAAACTGTAATCGACctaaagcaaaaagaaaactctATCAACTTGGAGCTTGTGAAAGTATTGAGCAACTTTGACATCTCCACGAGAATCGATGCCTCTAGCGTCCGGCAGCAGTTCAGTCACGTGAGCCGGCAGGTGGTAGAGGGCTTCTCATTCACCAAAATGTTCCTTGAGGAAATCAAGAAAGTATCCAATAAGATTCTTGCTGCTGTCTTCGTCTTCTGCATTCTCGTTGGATCAGCTTGTTACCTGAAAGAGTACCTGACCAACGTCAAGTTTGATAACATCTACATCACCCAGCAGCTGGAGCGACTGGCGCAGGAGAATGGAATCCCAATTTTGCCCACCTGCACAAAGCTATTAATCAACTCCAGAGGCTGCAAAATGTCACAGGAAGAGTTTTTCCAGTGCATTCCGCGCCTTCTTGTACTGACTTTATATCTCATCCTCACGGTTGTTGTCATTATATTGGATCAAGTTGTGTTCTGGCTGGTGGTTGCCAGTGAACCATGGCTCAAAGACCTCCCACAGATATTGGTCTCCATGGATGTGAAGTATAAGGTTCAGTATTATCTAGTAATCTGGCTCGGGAACAAACTCAGCCTCAACGATCTGATCGACTTTCACAAGGTATACTGCTTCAACCTCAGCACCATGTCGAGGCAGTGTATGATAGAACCATCCAAACCTGACATCAGTGTGGTCCTCTTGATAGGGTTCCTATATGTTCTGGCTTATATTGTGGTGGTCTGTGAGATCTACCTCAGGCGCATGCGCAGGAAAGTCTCCTCATCCTTCTTCAAAAGGCAGGAAGAAAAGAGAATCAATTTCCTATACCATAAAATAGTGGCAAAGCAGGAAATGGAAAGAGGTGGCATTTTCTTCATAAATACAACCAAtgggaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37426 lncRNA downstream 87906 49592278 ~ 49621960 (-) True G29904
TU37432 lncRNA downstream 95446 49610123 ~ 49614420 (-) True G29908
TU37418 lncRNA downstream 121061 49515484 ~ 49588805 (-) True G29899
TU37450 lncRNA upstream 74722 49786331 ~ 49787892 (-) True G29926
TU37452 lncRNA upstream 84362 49795971 ~ 49905089 (-) False G29928
TU37489 lncRNA upstream 262817 49974426 ~ 49974646 (-) True G29957
TU37522 lncRNA upstream 414031 50125640 ~ 50126131 (-) True G29987
TU37538 lncRNA upstream 473423 50185032 ~ 50185277 (-) True G30003
AMCG00008274 mRNA downstream 48116 49653570 ~ 49661750 (-) True AMCG00008274
AMCG00008273 mRNA downstream 172687 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008268 mRNA downstream 230789 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008269 mRNA downstream 294741 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008267 mRNA downstream 348355 49345488 ~ 49361511 (-) True AMCG00008267
AMCG00008277 mRNA upstream 27446 49739055 ~ 49752628 (-) True AMCG00008277
AMCG00008276 mRNA upstream 61505 49773114 ~ 49775968 (-) True AMCG00008276
AMCG00008278 mRNA upstream 126587 49838196 ~ 49840087 (-) True AMCG00008278
AMCG00008282 mRNA upstream 235402 49947011 ~ 49987575 (-) True AMCG00008282
AMCG00008284 mRNA upstream 285351 49996960 ~ 50029620 (-) True AMCG00008284
TU37036 other downstream 1426653 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1585184 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1791404 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 3227968 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3655520 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 84362 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 342216 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 562129 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 812378 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile