RNA id: AMCG00008276


Basic Information

Item Value
RNA id AMCG00008276
length 429
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00008276
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49773114 ~ 49775968 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGAAAATGCCTGTACGTGGTGCTCTTGATGGCTATGTTTTGGTGCACAGAGGCCCTTCCTCTTGCTGTTACAGCCAcactccctgtctgtctcttccCTCTACTGGGAATCCTGCCTTCCCACAAAGTGTGCCCACAGTACTTCCTCGATACCAACTTCCTCTTCTTTAGTGGACTGGTGATGGCGTCTGCCATTGAAGAGTGGAACCTGCATCGCCGAATTGCTCTGCGGGTCCTGATGATTGTGGGGGTAAAACCAGCCTGGCTGATCCTGGGAATGATGCTGACCACGGCCTTCCTGTCCATGTGGCTCAGTAACACCGCCACCACTGCCATGATGCTACCCATTGCCAATGCTATCCTGGAGAGCTTGTTTGGAGACCTGGAGACTCTGAAGCGCAACTGCCGACTAGCGGACGACTCGGAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37426 lncRNA downstream 151154 49592278 ~ 49621960 (-) True G29904
TU37432 lncRNA downstream 158694 49610123 ~ 49614420 (-) True G29908
TU37418 lncRNA downstream 184309 49515484 ~ 49588805 (-) True G29899
TU37450 lncRNA upstream 10363 49786331 ~ 49787892 (-) True G29926
TU37452 lncRNA upstream 20003 49795971 ~ 49905089 (-) False G29928
TU37489 lncRNA upstream 198458 49974426 ~ 49974646 (-) True G29957
TU37522 lncRNA upstream 349672 50125640 ~ 50126131 (-) True G29987
TU37538 lncRNA upstream 409064 50185032 ~ 50185277 (-) True G30003
AMCG00008277 mRNA downstream 20486 49739055 ~ 49752628 (-) True AMCG00008277
AMCG00008275 mRNA downstream 61505 49709866 ~ 49711609 (-) True AMCG00008275
AMCG00008274 mRNA downstream 111364 49653570 ~ 49661750 (-) True AMCG00008274
AMCG00008273 mRNA downstream 235935 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008268 mRNA downstream 294037 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008278 mRNA upstream 62228 49838196 ~ 49840087 (-) True AMCG00008278
AMCG00008282 mRNA upstream 171043 49947011 ~ 49987575 (-) True AMCG00008282
AMCG00008284 mRNA upstream 220992 49996960 ~ 50029620 (-) True AMCG00008284
AMCG00008285 mRNA upstream 311125 50087093 ~ 50089767 (-) True AMCG00008285
AMCG00008286 mRNA upstream 340065 50116033 ~ 50119306 (-) True AMCG00008286
TU37036 other downstream 1489901 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1648432 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1854652 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 3291216 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3718768 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 20003 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 277857 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 497770 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 748019 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile