RNA id: AMCG00008277


Basic Information

Item Value
RNA id AMCG00008277
length 1309
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00008277
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49739055 ~ 49752628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGATATGCTGGAAAAGTGTGATATGCGGACTCCTTTGGAAATCAGGAAAGAATCAGAGTACCAGAAGAGAGTGTGGAAAGGCTTCCTCATTTGCATTCCCTATGCTGCTAGTATTGGAGGCACTGCCACTCTGACTGGTACAGCACCAAATCTTATTCTTGTCGGACAGCTCAAAAGtTTTTTTCCAGAGTGCGATCTCATCAACTTTGGCTCGTGGTTCGTGTTTGCATGCCCCCTTATGTTGCTCTTTCTCATTCTTGGCTGGCTGTGGATCTCATTTCTGTATGGTGGTCTGAACACACGgttGTGTTTAAAGAAGAAAGATTTCCGGGCTGATGCTGAAGCTAAAGCCAGAGATGTAATTGCCCAGGACTATAAAAAACTGGGGCCAATCTCGTTTGCAGAAGGAGcgattggattttttttcttcttgttcgCCATCCTTCTTTTCACAAGAGATCCTAAATTTTTCCCTGGTTGGTCAAAGCTATTTAACAAAGGgtATGTCTCAGATGCTGTAACTGGGGTCACCATAGTATCCATTTTGTTCTTCTTCCCTTCCCAGAAGCCCAGTTTAAATTGGTGGTTTAATTTCCGATGTAAGTATCTGCAGATGTGTATTTCATCCCTAGTTAAAGGACAGGGTCAGcttcaaacactgaaaatgttccCCTTTTGTCATGGAAAAAAGCTCAGGAATGTGTTCCATGGAATATTATCCTGTTGCTTGGTGGGGGATGTACTAGATGTTGGATTTCAAGAACACTGCCCTAATGGGATGACTTCTCCTCATGGTCCTCATCTCATTTCTGTTGCTTCCATGTCCCAGGAATCAGGGTTGTCCATCTGGATTGGCAGCCATCTTCAGCCACTTGAAGGAGTTCCCCCGGGGGTGGCGGTGCTGCTCATCACGGTGGTTGTGGCCTCCTTCACAGAGTTCGCCAGTAACACAGCCACTATCATAATTTTCCTGCCTGTTTTAGCTGAACTGGCAATGCGTCTAGAAGTGAACCCTCTGTATCTCATGATACCTGGGACTGTGGGCTGCTCATATGCATTCATGCTGCCAGTTTCAACTCCACCTAACTCCATTGCATTTGCATCTGGCCATCTCATGGTGAAAGACATGGTGAAAACTGGGGTTGTAATGAACATCATGGGAGTTCTTGTTCTTTCTCTGGCTATGAACACTTGGGGCCGATACATCTTCAATCTCTCCACCTACCCCGACTGGGCCCGAACTCTTAACACCACTGCTGCCTTTGCAGGGCTGCACAACACACTTTCACCACTCAATGTCACCTTG

Function

GO:      GO:0044765

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37426 lncRNA downstream 117095 49592278 ~ 49621960 (-) True G29904
TU37432 lncRNA downstream 124635 49610123 ~ 49614420 (-) True G29908
TU37418 lncRNA downstream 150250 49515484 ~ 49588805 (-) True G29899
TU37450 lncRNA upstream 33703 49786331 ~ 49787892 (-) True G29926
TU37452 lncRNA upstream 43343 49795971 ~ 49905089 (-) False G29928
TU37489 lncRNA upstream 221798 49974426 ~ 49974646 (-) True G29957
TU37522 lncRNA upstream 373012 50125640 ~ 50126131 (-) True G29987
TU37538 lncRNA upstream 432404 50185032 ~ 50185277 (-) True G30003
AMCG00008275 mRNA downstream 27446 49709866 ~ 49711609 (-) True AMCG00008275
AMCG00008274 mRNA downstream 77305 49653570 ~ 49661750 (-) True AMCG00008274
AMCG00008273 mRNA downstream 201876 49497400 ~ 49537179 (-) False AMCG00008273
AMCG00008268 mRNA downstream 259978 49478333 ~ 49479077 (-) True AMCG00008268
AMCG00008269 mRNA downstream 323930 49413392 ~ 49415125 (-) True AMCG00008269
AMCG00008276 mRNA upstream 20486 49773114 ~ 49775968 (-) True AMCG00008276
AMCG00008278 mRNA upstream 85568 49838196 ~ 49840087 (-) True AMCG00008278
AMCG00008282 mRNA upstream 194383 49947011 ~ 49987575 (-) True AMCG00008282
AMCG00008284 mRNA upstream 244332 49996960 ~ 50029620 (-) True AMCG00008284
AMCG00008285 mRNA upstream 334465 50087093 ~ 50089767 (-) True AMCG00008285
TU37036 other downstream 1455842 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 1614373 48123925 ~ 48124682 (-) True G29544
TU36922 other downstream 1820593 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 3257157 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 3684709 46050695 ~ 46054346 (-) True G29301
TU37454 other upstream 43343 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 301197 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 521110 50273738 ~ 50274183 (-) True G30054
TU37623 other upstream 771359 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile