RNA id: AMCG00008289


Basic Information

Item Value
RNA id AMCG00008289
length 655
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00008289
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50308778 ~ 50313435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACTGTGCGCGTCCACGCGGTGCTAGCACGTGCCTTACGTGCCCGCGCCCGAAACCTTGAGCGTGGGCGCGGACTCGAACGTTCCCACCGCTCTCGCGCCGACGCATGGCATCGTGCGCGTTCCCGCTAGGCAGCGACAAGATGGCAGCTGCCGCCGGATCGGGCGTGAAGGTACCTCGTAACTTCCGGCTGCTGGAGGAGCTAGAGGAGGGGCAGAAGGGCGTGGGAGATGGGACGGTGAGCTGGGGTTTGGAGGATGATGAGGACATGACCCTCACTCGCTGGAGAGGGATGATCATCGGACCGCCAAGGACAATCTACGAGAACAGGATGTACAGCCTGAAAGTGGAATGTGGGCCCAGATACCCAGAGACACCTCCCTTTGTCAGATTTGTGACCAAGATCAACTTGAATGGCGTGCACAACTCCAACGGTGTGGTGGATACCCGGGCAGTTTCGGCTCTGGCAAAGTGGCAGAATTCCTACAGCATCAGAGTGGTGTTGCAGGAGCTAAGGAGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCACAGCCACCAGAGGGCCAGATCTACAGCAACTGATCACCAGCTACAGTTTTTGGTTTTCTCGTTTTTTCGTCTcatctttccccccccccaccccctccttcc

Function

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0035370 UBC13-UEV1A complex cellular_component
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37590 lncRNA downstream 41343 50267076 ~ 50267435 (-) True G30053
TU37588 lncRNA downstream 47591 50260756 ~ 50261187 (-) True G30051
TU37586 lncRNA downstream 56856 50251710 ~ 50251922 (-) True G30049
TU37538 lncRNA downstream 123501 50185032 ~ 50185277 (-) True G30003
TU37522 lncRNA downstream 182647 50125640 ~ 50126131 (-) True G29987
TU37595 lncRNA upstream 737 50314172 ~ 50314425 (-) True G30058
TU37596 lncRNA upstream 14835 50328270 ~ 50334605 (-) True G30059
TU37601 lncRNA upstream 40460 50353895 ~ 50356348 (-) True G30061
TU37606 lncRNA upstream 72825 50386260 ~ 50386559 (-) True G30065
TU37618 lncRNA upstream 132284 50445719 ~ 50448970 (-) True G30070
AMCG00008290 mRNA downstream 15415 50292332 ~ 50293363 (-) True AMCG00008290
AMCG00008287 mRNA downstream 152913 50147817 ~ 50155865 (-) True AMCG00008287
AMCG00008286 mRNA downstream 189472 50116033 ~ 50119306 (-) True AMCG00008286
AMCG00008285 mRNA downstream 219011 50087093 ~ 50089767 (-) True AMCG00008285
AMCG00008284 mRNA downstream 279158 49996960 ~ 50029620 (-) True AMCG00008284
AMCG00008293 mRNA upstream 84304 50397739 ~ 50406216 (-) True AMCG00008293
AMCG00008295 mRNA upstream 137652 50451087 ~ 50518539 (-) True AMCG00008295
AMCG00008298 mRNA upstream 211885 50525320 ~ 50527378 (-) False AMCG00008298
AMCG00008297 mRNA upstream 236630 50550065 ~ 50559321 (-) True AMCG00008297
AMCG00008300 mRNA upstream 478641 50792076 ~ 50798319 (-) True AMCG00008300
TU37591 other downstream 34595 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 254676 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 407827 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 2025565 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 2184096 48123925 ~ 48124682 (-) True G29544
TU37623 other upstream 210552 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile