RNA id: AMCG00008290


Basic Information

Item Value
RNA id AMCG00008290
length 231
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00008290
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50292332 ~ 50293363 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTATGGGAATATGGCTTATCATCTGTCGGCCACTCTGGGATCCATGGCCAACCCTGTGGCCTGCATCATTGCTATGTTTCTCCCCAAAAGGTCTCTTTTATTCCTAGGAGTCCTGTGTCTGTTTGGGACTGGCTTTGGCACTTACAACATGGCTATGGCAGCTATGAGCCCCTGCCCTCTATTGCAAGGGTCAGCAGCAGGAGTTGCAGTCATTGTAAGCAATTAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37590 lncRNA downstream 24897 50267076 ~ 50267435 (-) True G30053
TU37588 lncRNA downstream 31145 50260756 ~ 50261187 (-) True G30051
TU37586 lncRNA downstream 40410 50251710 ~ 50251922 (-) True G30049
TU37538 lncRNA downstream 107055 50185032 ~ 50185277 (-) True G30003
TU37522 lncRNA downstream 166201 50125640 ~ 50126131 (-) True G29987
TU37595 lncRNA upstream 20809 50314172 ~ 50314425 (-) True G30058
TU37596 lncRNA upstream 34907 50328270 ~ 50334605 (-) True G30059
TU37601 lncRNA upstream 60532 50353895 ~ 50356348 (-) True G30061
TU37606 lncRNA upstream 92897 50386260 ~ 50386559 (-) True G30065
TU37618 lncRNA upstream 152356 50445719 ~ 50448970 (-) True G30070
AMCG00008287 mRNA downstream 136467 50147817 ~ 50155865 (-) True AMCG00008287
AMCG00008286 mRNA downstream 173026 50116033 ~ 50119306 (-) True AMCG00008286
AMCG00008285 mRNA downstream 202565 50087093 ~ 50089767 (-) True AMCG00008285
AMCG00008284 mRNA downstream 262712 49996960 ~ 50029620 (-) True AMCG00008284
AMCG00008282 mRNA downstream 304757 49947011 ~ 49987575 (-) True AMCG00008282
AMCG00008289 mRNA upstream 15415 50308778 ~ 50313435 (-) True AMCG00008289
AMCG00008293 mRNA upstream 104376 50397739 ~ 50406216 (-) True AMCG00008293
AMCG00008295 mRNA upstream 157724 50451087 ~ 50518539 (-) True AMCG00008295
AMCG00008298 mRNA upstream 231957 50525320 ~ 50527378 (-) False AMCG00008298
AMCG00008297 mRNA upstream 256702 50550065 ~ 50559321 (-) True AMCG00008297
TU37591 other downstream 18149 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 238230 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 391381 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 2009119 48281342 ~ 48283213 (-) False AMCG00008256
TU36999 other downstream 2167650 48123925 ~ 48124682 (-) True G29544
TU37623 other upstream 230624 50523987 ~ 50528036 (-) True AMCG00008298

Expression Profile