RNA id: AMCG00008301


Basic Information

Item Value
RNA id AMCG00008301
length 5990
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00008301
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50924052 ~ 50936800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATTTCTACTTGAAGGGCTAATTTCCCAACTCGAAGAATttgttgtaaagaaaaaaaaatattgttactATTTTGCTCCCGATGGTTGGACCATGTCGAGGCGCAAGCAAGCTAAGCCGCAGCACATCAACTCCGAGGAGCCCGGTTCGGCAGAGAATGggGTTCTGCAAGAAAGCCCACCGGAAGAAGAAGGCAGCAAGGCGAAGAGGGTCCGCATGGAAGAGACCAGTGTTTGTGACAGATGCTGTGCAGAGTTCTTCGACCAGTCAGAGTTCTTGGAGCATCAGAAAAATTGCACTAAAAGTCAGCAGGTCCTCATTATGAAGGAGGGGGAAGGAGGGATTTTGCCTGACTTTCCACGGGGTCCCCGAGAGGGCTTCCCTGGGGAGCAGCAGGAAGGCCCATCCTGCAATGGGGGACAGCCTGATAACAACCGAGTCCAGCTGGCAGAGAGGATGGAGCATGAGGTAGAAATGAATGGGGCAGATCCCCAGAAACGACCGCTACACTCTGAAATGTCTGCCAGCCCAAACATGAGATATTTGCCCGGccccaaaacacaaaacactaatGTAACATTAGAGACTATGACCAGCACTAAAGTGGCTGTCACTCAGCATTCATCCAACGACAAGCCTTCCCAGTCACTAGCCAGCCTGAATGCCATCCCTACAATCCTTGAGCAGTTAGTGAGTttgcagcaacagcagctgcagcaaaTTCAACTGACTGAACAGATTCGCATTCAGGTGGCTATGATGGCTCCCCATGGCCTTCACTCGTCTATAAGTGCAGCTGTAGATCCCTTGAAAGCTCTCGGCGCTCACTTGTCTCAACAgctttctgctgctgctgccttgATTGGGAAAAGAACTGGTACTCAAAGCCTTTCCCTTGAAAGTCTGAAACAAGGAAAGCTACCTCATCCCAACAATGTTCCTGCATCTCTATCTGGAAGTGGTGGAATTATGGCCTCCAAATCAGATGGCTCGAAATCTCTGCCCAACTTGGCCCCCCGTATTCCGACATTGTTGCCTCATTCACCTGGGGCCCTAGCTTTCcagaaccctttcactgccatTTCAGCTGGTCTGGATCCCATGAAAAAGGGTAAAGGCAAGCCTCCCAATATCACAGTAGAACCAAAGACCGGGTCGGAGGAGCCTCTGTTTAAGCACAAGTGCAAATTCTGTGGCAAGGTGTTCGGAAATGACAGTGCTCTTCAGATCCACCTGCGATCTCACACCGGAGAAAGGCCGTACAAATGCAATATCTGTGGAAACCGATTCACCACCAAAGGAAATCTCAAAGTGCACTTCCAGAGGCACAAAGAGAAGTATCCTCATATCCGCATGAATCCCCACCCTGTGCCTGAGCACCTTGACAATATCCCCACAAGCAGCGGAATTCCCTATGGGATGTCAATGCCTCCGGATGAGTCCAACTTTGTGGACAGTAAACCAGTGCTTGGATTGCCTGCTTCCACTAGCTTCCAGCCCCCCATGCTGCAGAGCCTCAAACCCTCCCAGGAAAGTTCCCTGGGGAGTGAACCTTCTTCCCAAAGACCATCGTCTTCTGGGAGCGATGGTGCATCCATTTCCTCCAGCATGTTCAATCAGGAAATGTCCTCGGAGCAGAATCTGGAATCCCCTGAAGGTTTAGGTGGCATGCACATCTTGAATGGCAATGGCCTCCTCAGTGAGCACAGCTCTGGGACCGCCAAGCTGCAGCAGATGGTGGAGAGCCTGGAGAAGAAAACCGGTGACCCAAACGAGTGTGTGATCTGCCACCGAGTGCTGAGCTGCCAGAGCTCCCTGAAAATGCATTACCGGACACACACTGGGGAGAGGCCTTACAAGTGTAAAATCTGTGGCCGGGCTTTCTCAACCAAGGGCAACCTGAAAGCTCATTACGGTGTCCACAGGGCTAGCACGCCACTGAAGATGCAACACTCCTGTCCCATCTGCCAGAAGAAGTTCACCAATGCAGTGGTCCTACAGCAGCACATTCGCATGCACATGGGAGGCCAGATACCCAACACCCTGCTGCCAGAGAACTCCTTCGAAGGGCCAGAGATGGAGTCTTCCTTGCCTGACGAGAGAGCCCCTGAGTTGAACAGCTACAATGACGAGAGCCTGGATGAGCCGGAGATGGAACGGGATTCCCAGGAAGCTCCCAGCGGCATCAACCCCAAGCCTTtgcctctgcctctccctcacTTTCCCCTTCCTCTGTCTGTGCCACCGCCCCCTCCTCCAGCTCAGGAAGATCAGAccacctctcctctccctcttttctCGGGCATAGCTGCCCTGGAGAATCACATGAAGAACGTCACCTCGGCCTTAAACCTGCAACGGCAGGCCAGCATGGTTTCAGAAAGTGATGGAGCAATGACTGAATTTCCTGCATTGCCTGGGGATCAGGAATACCAGAATGGCAGGAGCCCAGCAGTCTCGGACTCAAGCTCATTCCACTCGTCATCGCCCATTGACAGCCAGCTGGGAAGCAACGTGTCGAAGTCTCCAGGCACCGCCGCTGCCACCCCTGAAGATGGCAGCCGAGTGAACTCCAGACCGGAGTCTGATCACGGGCATCTGGACACTGAATCCAGTGGGGCTTTGGATCTCACGTCTGTCAACTTTCTCCCGAGGGCAATCAAAGAAGAACCTGGCCTTTCCATGTCAAATGGAGAGTATGgTGCTAGCCATATTCAGTTCATGCGAGTTCCACCCAGTCTCATTAAGCTGGAGATGCAGATCCCTCCTGAAAGGCCACTAGGCTCCCCGAACCAGTTTCTGGGCTCCCCGAACCAGTGCCTGCAGCAGCCCCCCAGTACTGCCGCCCCCCGCCGCTCTGCCAAGCAGCACCTGTGCAACACCTGTGGAAAGAACTTCTCTTCGGCCAGCGCCCTGCAGATCCATGAGCGTACTCACACTGGGGAGAAGCCCTTTGCCTGCACCATCTGTGGCCGTGCCTTCACCACCAAGGGCAACCTCAAGGTTCATGTGGGGACTCACATGTGGAATAACTCTGCGAGACGGGGTCGCCGCCTGTCCTTGGATAACCCCCTGGCGCTGATGGGAGCAGGAGCTGAGCCCAAGATGTCCGAGATGGGTACCCCACCCAAGGATCTGGCTCCTCCCCCAATGAACATCGATCCTTCTGTCTGGAACCAATATGCTGCCGTGTTTACAAACGGACTGGCTATGAAGACCAATGAGATTTCGGTCATCCAAAATGGGGGCATTCCAATGCCTGGCAGTTTTGCAGGGGGGCCTTTAGCAGGCTCCACCGGAGGCCTAGTGAAGATAGATGGGACTCACTCTGGCCTCCCAGTCTCCATGGCGGAAATCGAGAAGAACGGGTTGGAAAGCGTACCAAAACGCCAGTTTCCTCATTTTATGGAGGAGAGTAAAATTGCAGTGAATTAAATGGCAGCAGACCAGTTGGACAAGGCACAAATTCTTCACTTTTAGTCataggccttttttttttttttttttttggcaaatctGCCAACAACCTCATTTTCCTactgaaatgtataaacagGTTTTTATAATATCTATGTTTCTATTGAACACTTGCTCACAAATGAGTACAATCACTTTTTGTTTAATGTGCTTTGCAAAATCAAAAGTGGAGTTTTCTCTCACTGAACAAACATTGCGGGTATTGCAAAGTgaaatttactttttctttttcttacttGAAGTGTACAgcctttaatttttttatatatatatttttcactttctcATCCAAAGCTTTAAACTGTTTACCTCTGTTTAGTGCTAGTATTTCTTCGAGTAGAACTTGAAATAAACTACTGTAGAGATTTTGGATTGCTTGTATTTACTATTGTATGTTGAAATAAGATATGCGGGTAACTTTTTTTTACTGCCAAGACTGCCATCCTTTTAGTCTGTTTTCTCTGGATGTTGAATGTATTAGTCTTACTTGAAACGTCTTGGCCTATTAATGGGTCTCTTTTGGGGGGAAAACTCCTATGCCTTGGCAGTATGTTCTGCAAGATGTAGATTTCTTGGAGTATGTATCTTTTAGTCTTGGTTGggggaaacttttttttatttgaagtccTGTTATTTTGTCAACAAAGGATCTGAAAAGTTTTAAACCCACAAGATTGCCATCAGTTATATGTAGGATACTTTTGCAAATGTCTAGGAAATATTGAAATCTCCCTCTCGCATGGTGGAGAAGTGGAAAAAATGGTTTGGTTCCAAGTATTGGACAGCTTGACCCCTGTGGCTTGTGGATATGGAATTAAGCTCTCGGATATATTTGAAATTCCTTTTGATAATGGAGATTAGTTATACTTTGGTCTATAGTCCATTTATACCTGGTCAAATTTGTCCAGCACTTCTTTCAAGTGCCTAGCTTTAACTAACTCTGCTTGTACTGCACATAACTTTTACACTTGCATAttttgtggtggttgttgtggAGTTTGTCTCCTTTCCCCTCAGACTGTGATGTCCAAGATTTCTGGAAAGTCTTGGTGTGAAAATTTAAGCTTAACTCCTCCAGGAAAAACCTGGTCATTTGAAATGGTTTGAAGCCCTCCTGAATTTTCCTGAAATGGTTTCTGTCAAAGGGGGATGGGGGACAAATCTTCTAGAAGCAGGGTACTTTCTGGAACCAAAGTTTTAGTCCTAAAATCTGTTCTACTAATGACTGCCTTAACCCATGCCTGCACTTTAATATAAACTCATTTTCTCTCTGGGTTTTCAAATCATATCCAATTCTAATGACTCCTGTGTTTTGCAAAGCTGTTTTAATCGTATGGGATGGGTTTGAAtagtaaaatgcatttcaattggGGGGGCTTAATAGTTGTATGAATTTAGGGCATGGTTGCCTGCTGTATAAGGTTTTTTTGTGGTATATTTTATTACCCCAATACTCCTTCAtggtatatattttcaacatctTACTGATACCTGTTCACCCTTTCTGAAAACTGTTTGCTGTCAATGAACACTAACGATctcaaaatgtttgtattaagAGGCCTTTTCTTCCACTcaggattatttatttcatttagcaCATTGAGTAAACATTTAGGAAAATTTCAGGCAgctgctttcttctttttcttcctaaaaactgtttttccgtaaaatgaaacaaaatatacgaatagatttttgtaaaaaatataaataaagaccaATAGGATTTATGAAACTCTTCAAAAAGGGGAGGAAAgaactaaaaccaaaaacatgtgTGTTCCCTTAATCAAAGAAACTGAATATTCCTTAGGTTTCTGTACAAATACACCAGGTAGACTTATCACACTGGTCTGTACTACAGTAGGGCTTTTTTGGGGATCATACAGAATTTTTATTTCTACCtcattgctatatatatatatatatattttccttttattggaGTAGTGTTGTAATTGTTGTAAATTTGAGCTTTTAGAGTGGATGCTCCATGTTTTCTCTTAATGTAGGTAAGATGCATTTTTCCTTGAGCAAAACTGAATTTCTCCTTTTCAACACTTATTTTATCCATAACCTGCtgatattttgaattgaatgtatTGCCAGATACTTTGCACGTCTCTTGCTCTGAACAAATCctttatttgcattaattttctTACTGAGTTTTGTTATTGGCTTTTCTTTTAATCGTAAACAACTCCCCTCGCCCCCCCTGGAAAATAGTGTTACTGCATCTTGCctccaaatatatatagatatatattttgccaagttgtgcctttttaaaaactgcatcACATTTTCTGGACTGGAGGCATCattcttatatataaatataaaagtttgTGATCTAATTGTTTCTTCTGTTACTTTCTATGAAATTGGTCCTGTTTGGGCATGTTTACATTGCAGACTTCAGAAGTGTCACCTGcaaaatcatttgttttcttttgagcaTCTGCTTGTTACTtttctggtctttttttttttttaaataaaaa

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37660 lncRNA downstream 170878 50750421 ~ 50753174 (-) True G30108
TU37646 lncRNA downstream 263876 50659944 ~ 50660176 (-) True G30096
TU37644 lncRNA downstream 269539 50654219 ~ 50654513 (-) True G30094
TU37641 lncRNA downstream 310149 50613588 ~ 50613903 (-) True G30091
TU37636 lncRNA downstream 322002 50601457 ~ 50602050 (-) True G30086
TU37698 lncRNA upstream 131340 51068140 ~ 51068561 (-) True G30143
TU37706 lncRNA upstream 245874 51182674 ~ 51182933 (-) True G30149
TU37732 lncRNA upstream 483847 51420647 ~ 51421417 (-) True G30170
TU37734 lncRNA upstream 488531 51425331 ~ 51425584 (-) True G30172
TU37786 lncRNA upstream 817283 51754083 ~ 51754304 (-) True G30218
AMCG00008302 mRNA downstream 7672 50840260 ~ 50916380 (-) True AMCG00008302
AMCG00008299 mRNA downstream 110246 50810379 ~ 50813806 (-) True AMCG00008299
AMCG00008300 mRNA downstream 125733 50792076 ~ 50798319 (-) True AMCG00008300
AMCG00008297 mRNA downstream 364731 50550065 ~ 50559321 (-) True AMCG00008297
AMCG00008298 mRNA downstream 396674 50525320 ~ 50527378 (-) False AMCG00008298
AMCG00008303 mRNA upstream 90468 51027268 ~ 51036822 (-) True AMCG00008303
AMCG00008305 mRNA upstream 484674 51421474 ~ 51441540 (-) True AMCG00008305
AMCG00008306 mRNA upstream 534419 51471219 ~ 51497212 (-) True AMCG00008306
AMCG00008307 mRNA upstream 573954 51510754 ~ 51515400 (-) True AMCG00008307
AMCG00008311 mRNA upstream 806609 51743409 ~ 51743798 (-) True AMCG00008311
TU37623 other downstream 396016 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 649869 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 869950 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 1023101 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 2640839 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile