RNA id: AMCG00008306


Basic Information

Item Value
RNA id AMCG00008306
length 3585
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00008306
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 51471219 ~ 51497212 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTTTCCCCCAGAGTTACAGAAGCGCCTCCAGCTAAGAGTAAGTGAGCATCTACATGTGGAGCACCAGCCACCGTGGCCTTACTGAGAGCTGTCATCGCCTGAAAAAGACAAGACTGTGACATGTTCTAGACACTGCCAAAGGAAGTACTACAAGGTTTTTCCTGATTCTCCCAGATCCTCATTCAACATGGGTAATGAACTGTCCACCCCTGAAACTGAAAGGGAAAATGCAACTGATCTGCAGGCAGAGCCCATTCCTGAGAAACTGCAAAATGGAGGACCGGTTGGCCAGCCCATGAACATTTCTGTGAATGGATTTGATGACGCAGTGTGCCTCAAAACAGATGTGCAGCAGAACAGTGCGCTCCCCTCATCCTCCGAGACAAAGGAGATGAGCCCCAGGTCTGAGAAGGAGGGAGATGATGGCAGGAAGAATGGCCGGGTCACGCTCTCGGCTGCCAAGTCCAATTTCTCAATGTCATTCGCCCAGCTGGTGCCAGGCCGTACTGAAGCCAAGATCAGCACCGATCCGTCGCCACCGCCGCCACCCAATGGCATGGTGCCCATTGCCCAGAAGGCCATGTCTCTCAACCTGAGCCCCCCTCCCAGCCAGCCGGACCCGACCTCTGCCCAGGAGGAGAGCCCAGCTGAGGGACCGCAGGTCAGTGTGGAAAGCAAGATCAGCTTCTTCGATAAGCTGTTCAAACAAGAGAAGGACAGTAGCCAAGCAGCCAGCAAGGTCCAGCCACAGTCCAGCAGCGCCGAGTGTAACAGTGTGTCGCCCCCCGAGGAAGCTCCCCTGAAGATCAGCGATGCCCTCTGTAGTGAGCCCACGGAGGTACAGAAGAGTACAGTGACGCTCCAGAAAGCAGAAGGTAAATCTGGGAGCGCACCTGCTGTCAACGGGACTACTCAGAGCTCTGTGGGGGAGCAGGCCAATCAACAGGAGGGAGCTGAAGAGGACACTGCAGCAGAAGACCACCCAGTTATgaactttttcaaaactcttGTGACCCCAAGTAAAACTCCAAAAGCAGAACCTGACTCTCCTGATGTCTCAAAGGAGAAGAAGAAAGCCAGTGAGGTGTCTGAAGGTAAGGGCAAAGCTGAGAAGGAACAGAAGCAGCTGAAAATGGAGAAGGCTTCAGGGGCACAGTCGAGTCCTCAGGCAGCCCAGGACGAATCAACCAAAACCAAAGAGCAGGAATCCCCAGCCAAGCCGAAAACAGAGAAAGACACCTCCAGCCCCTTCAGCATGCTCTTCAGGCAAAAGACAGTGAAGGAGATTCCACaggcaaaaacaaatGGGGAACAGGACGTGGATGCTGCATCGCCTTTGAAAGCTACCAAGGCTGTGGCTCCACCAGAAGCAGCTAAAGGTGACAGCAAAGCAGATTCAGCAGCTAAGAGCCAGAAAACCTCCCAGAAAGAGGCACCTAAAGAGGCAGCCAGTGAGCCCGAGACCCCTGTGAAGCAGAAGCCTGCCAAGGACACATCCAGCCCCTTCAGCAAACTCTTCCGCCCAAAGACAGTGGAAGATGAAATACCAGAAGCAGATGGGAAGGCTGAGGTGGATGCAAAGTCCACAGTCCCAGAAATGCCCACAGAGCCAGAGCCAccaaaagaagaagagaagaagcCATCCAAATCCAATTTCATCTCCTTCTTCAAAACAAAGACTCTTGACAAAAGAGAGAAGGCCGCCCAGGCTTCTGCTGCAGTGGAAGCTGCAAGTCCCAAACCCAAAGAGGAGCCCAAGTCTCAGGCTGaagcagagaagaagaaaagtgGAAAGCAAGAGAGTGTGCAGAAGGCCAAGACCCTGGAGGTCCCTCAGGACAGCAAGTCCGTCTCGGAGACCTCACAGAATGGAGAAGACAACCCCAGGAAAATTGAAAAGAGGAACTCCATCGGGGTGTTCTTCAAAGGCCTGGGCCCAAAAAGGCTGTCAGAGGTTGGGGTTCAAACAGACCCTGTGACAATTACCTATCCCACCGAAAAGTCCAAATAATATCCATCCTGGAAACCTCAAGTATGTTTTGTGCTGAGAGGATATCAGACTGTCGATGCATGAACTCTTATCCCTAAAAGTCTTTTCTTTATTGTCTGATTACTGTGGGGGGGGAGTTCTCTATATATTCAGTACAGCAGGGCTTAATGCAAGTGACTGTTTGTGGAAGGAAGTTAGTTCTGTTGTgcaggggggagagaggaagtaCTCAATGTGTGAAAGGCTAAAGAAAAGGATAACTTCAACTCAGTGATATAAggtaaaggtttttttttgtttttaacttaatttcatCTGATAGATGgccttaaattaaattgtatgttcattgtatttttaattattattatattttattctttatcgGATTCAGTTAACTGCTAATTCTTCTAACACCTCCACTGGGTCCCTCTCAGGATTTTTCACGATAACAAAAACGATCTTCTTTCTCACATGTAGTTCTGCAAATGACAATTTGTTAATATACgccaataataaaatgtgtaagaGGAATTTTTACATTGGTAAACTGGGTTCAGTTTGCAGCTTCCTGTgcttattttcattcttttaagAAAAAGGATTATTATTGGTTCTTATGATTGTTTCTtatgaattgtttttctttctttaaacaaaaatataataactttAACACCAATTTAAGGTAAGTCATATCAAATTATTTAGACAATGATTGAAGCTTTGCAGTTAAGTGACTCAGTAGGTTTGGCAGAACAAAGTGTACAAGTTTGCATATTAAAGCACAGTATtgaaactttaattttaatttcagcttCCTAAGGGAATTATATTCAGATCTCATCCTCTTTCTGGAAGTGTCTTCCCTGAAAACAGATCATTTGTATCTTATCTACTAACATCATTGCTGATGTTTAGTTTTATCTGAGTAGCATTTGCAAGgtctttgtgttcattttattttatttgtctttttcctttGGGGAACAAAAATAGTGAACCGTTCTGTGGAGCAAGACACATTAAACCCAACCTTGAGAGTGTGGTCAGCTTGCACCTCGCCTGCTGGTTTAATAGGAATGTGGGGAGCCCTCTGCTATTTTTACCAACCTAAATGCTTACTGCACATTAAAAGTGGAAACCAGAAATGCATAGTAGCAGAAATGAGAGACCATACAGATAAGGGAATCGATGGGCATCCTCTATTGACACTGACAAGACAGAATGGCAGAAATGGGAGCTAACTCAATTTACTTAATACCATACAATGcagcacaatacaatacagatttatttctaCGTAATTTCTTTAATGCTTAGACCACCCAGAGCactttacaaaattacaaacaacagaacagtacttatttttttataatacccAAACCACTTACATATGAGCCAACtcaaaaagatacattttaactgGGATATGATGCTGGTAGTGATGCATTATGCCATCaacatgttttgctttggtgtttctgtttttgtagtttattatttatatacccAATTTcgtatttactattattattattattattattattattattattattattattattattattattattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37734 lncRNA downstream 45635 51425331 ~ 51425584 (-) True G30172
TU37732 lncRNA downstream 49802 51420647 ~ 51421417 (-) True G30170
TU37706 lncRNA downstream 288286 51182674 ~ 51182933 (-) True G30149
TU37698 lncRNA downstream 402658 51068140 ~ 51068561 (-) True G30143
TU37660 lncRNA downstream 718045 50750421 ~ 50753174 (-) True G30108
TU37786 lncRNA upstream 256871 51754083 ~ 51754304 (-) True G30218
TU37788 lncRNA upstream 348283 51845495 ~ 51845770 (-) True G30220
TU37793 lncRNA upstream 431894 51929106 ~ 51929379 (-) True G30225
TU37796 lncRNA upstream 569996 52067208 ~ 52067456 (-) True G30228
TU37799 lncRNA upstream 594420 52091632 ~ 52093655 (-) True G30231
AMCG00008305 mRNA downstream 29679 51421474 ~ 51441540 (-) True AMCG00008305
AMCG00008303 mRNA downstream 434397 51027268 ~ 51036822 (-) True AMCG00008303
AMCG00008301 mRNA downstream 534419 50924052 ~ 50936800 (-) True AMCG00008301
AMCG00008302 mRNA downstream 554839 50840260 ~ 50916380 (-) True AMCG00008302
AMCG00008299 mRNA downstream 657413 50810379 ~ 50813806 (-) True AMCG00008299
AMCG00008307 mRNA upstream 13542 51510754 ~ 51515400 (-) True AMCG00008307
AMCG00008311 mRNA upstream 246197 51743409 ~ 51743798 (-) True AMCG00008311
AMCG00008312 mRNA upstream 571270 52068482 ~ 52069809 (-) True AMCG00008312
AMCG00008313 mRNA upstream 639957 52137169 ~ 52144727 (-) True AMCG00008313
AMCG00008314 mRNA upstream 691970 52189182 ~ 52250096 (-) True AMCG00008314
TU37623 other downstream 943183 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 1197036 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 1417117 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 1570268 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 3188006 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile