RNA id: AMCG00008307


Basic Information

Item Value
RNA id AMCG00008307
length 1077
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00008307
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 51510754 ~ 51515400 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTACACAACCCCTTGTTCAAGTGAGGAGCAGAACCTCAATCCTCGCCCTATGGGTTTCACCACACGATCTCTGGCGCAGATATTGGAGCACCTTCAGGTACACGGCAGGCGAGCCAATAAAAGACGAGGCCACAACCTGAGCCACCGCAGCTCAGTCACACGGCTAGATGGCTCCCAGAAATTTGGGCGTAAGCGCAAGCAAGAGGCGATCGAGTCCAACAACAGCGTTGCCACTGCCACTACCTCCACAGCAACTTTAAATAACAGTGGCTACAACACTGATTGGGACTATGACCTGGTGCAACATGAGGTGCTGTGCTCCAGTACCAAATTCTATGAAGTGCTAGAGTTCCTTGGCAGGGGCACATATGGCCAAGTGGTAAAGTGCTTAGAGGGGGGCACCAACAAGATTGTGGCTGTCAAGGTGCTGAAGAACCACCCAGACTTTGACCAGCAGGCTCTGATCGAAGTCAACATCCTGGCCAGGCTTAGCGCAGAGTGTGCCAATGACTATAACTTTGTCCGGGCTCTCGATTGCTTCCAGCACAAGGGCCACATACGCATAGTATTTGAGATGTTGGCGCAGAACCTACACGACTTCCTCCGCTCCAGGCCCCTGCCCCTCAGGTACATTCGACCTATCCTTCAGCAAGTAGCCACCACCCTGACGAAGCTCAAGACCTTGAGGCTCATCCACGCTGACCTCAGGCCTGAGAACATTATGATGGTGGACCCTGCCATGCAGCCGTGCAGGGTCAAGGTGATTGACTTTGGCTTGGCATGCCATGTCTCCCAAGCAGTGCAGTCTGCCTACCTGCAGTCCAGATATTACAGGGCTCCTGAGGTCATCCTCAGCCTACCCTTCTGCGAAGCCATTGACATGTGGTCCTTGGGATGTGTCGTTGCCGAGGTGTTTCTGGGGTGTCCTCTGTTCCCTGGTGCATCAGAGTATGATCAAATCCGGTACATTTCCGAGATGCAGGGTGTCCCAGCAGAGAACTTGCTAAATGAAGGGACAAAGACGGCAAGGTTCTTTGACCGAGATCTGGACTCTGCACACTGTGGAGACTGA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37734 lncRNA downstream 85170 51425331 ~ 51425584 (-) True G30172
TU37732 lncRNA downstream 89337 51420647 ~ 51421417 (-) True G30170
TU37706 lncRNA downstream 327821 51182674 ~ 51182933 (-) True G30149
TU37698 lncRNA downstream 442193 51068140 ~ 51068561 (-) True G30143
TU37660 lncRNA downstream 757580 50750421 ~ 50753174 (-) True G30108
TU37786 lncRNA upstream 238683 51754083 ~ 51754304 (-) True G30218
TU37788 lncRNA upstream 330095 51845495 ~ 51845770 (-) True G30220
TU37793 lncRNA upstream 413706 51929106 ~ 51929379 (-) True G30225
TU37796 lncRNA upstream 551808 52067208 ~ 52067456 (-) True G30228
TU37799 lncRNA upstream 576232 52091632 ~ 52093655 (-) True G30231
AMCG00008306 mRNA downstream 13542 51471219 ~ 51497212 (-) True AMCG00008306
AMCG00008305 mRNA downstream 69214 51421474 ~ 51441540 (-) True AMCG00008305
AMCG00008303 mRNA downstream 473932 51027268 ~ 51036822 (-) True AMCG00008303
AMCG00008301 mRNA downstream 573954 50924052 ~ 50936800 (-) True AMCG00008301
AMCG00008302 mRNA downstream 594374 50840260 ~ 50916380 (-) True AMCG00008302
AMCG00008311 mRNA upstream 228009 51743409 ~ 51743798 (-) True AMCG00008311
AMCG00008312 mRNA upstream 553082 52068482 ~ 52069809 (-) True AMCG00008312
AMCG00008313 mRNA upstream 621769 52137169 ~ 52144727 (-) True AMCG00008313
AMCG00008314 mRNA upstream 673782 52189182 ~ 52250096 (-) True AMCG00008314
AMCG00008322 mRNA upstream 737277 52252677 ~ 52293414 (-) True AMCG00008322
TU37623 other downstream 982718 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 1236571 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 1456652 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 1609803 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 3227541 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile