RNA id: AMCG00008314


Basic Information

Item Value
RNA id AMCG00008314
length 3730
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00008314
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52189182 ~ 52250096 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGTTAATGAAGGTGTGTTCTCACGACACGGTTAAGGAAAACACAAGCCTTTCTATGGCATTGCAAGGCCAGTCTTTAAGGAAGGGAAAACTTACTGCCGAGAAGCAGCTGTGGCTTTTTAACTCGGTGAAGAGCGGTCAGCTGAGCTTTGGACAGGCGCTGGATGTCATGAATGACAGCTCGAAAGCCATGGACACTATCAAGCCCACACCACAAGTGCCGCAGCTCAGCAATGAGATGCAGCTCAGTATTATGAACATGGTGAAGAGAGGGGAGTTAACCATCGAAGAAGCTTTGAACCAGGCGAGGAAAGAGAAATACGAGCTTTTGAAGCAAAAGTTGCCGCCACAGGAAGAAAATATCCCACAGTACAATTTCAGCGTTTACAAGTACAACAGGTACCGGTGGCAAAAACGTATCTTGCAGATTGATTTCATTGCCAATGTCATCTGTAGCATCGAGAGAGGAATTGTCAAGCGACAGCTCCCCTTCTCAGCAGTCAAATCCAGTGAAGATGGAGTGGGATCGAAGTTCTCCATATCATTTCAAGGGCGGCATGACTATGAGCTGGAAGCAGCATCAGTGGAAGACAAGCAACAGATCATGCAGCTGGTAAATAGAATAATATACAACAACATATATGATGTTCCCATCCACGGCAACTCAGAGACTTATGAGGAGCCTTCAGGTTTGAAGATAATGCGTGAAGGAGCTCTGGATTTACAGAGAGGGGGTATGGCTTCACTCACATGGGTCAAGTTCACAGCAAGACTTCTGGAGGGGGAGCTGGTCTTGTACCCCATTGAGTCAGCCAATGAGAACAATGACTCTGCCTCCACGTGCTCCTCTGTCATTATCCACTTCTCGGACGGCAACGCCAGCGTGGAGAAACACCTCGGCTGTGACACCTTCTCTGTGCTCACCAAGAACAACGAGTACCTGTTCAGGGTACCTGTTACCAGTCAGATGAAGAGCACAGAAGCCATTAAGAAGGAACGGGATGAGTGGGTACAGGCCATTGACAAGTTCTGCCTGGACTGGAAACATAGGTCACAGTCAGAGCCCCACAGCATCTACGAAGTCATCAGGGAGCCAAACGGTCAGTGGGGCAAGGAGCAGAAGGAACCTGGTAACAAGCTCCTTGTTTCACCCTTGGTAGAGAAGACTGCCTCCCTTAAACCAGAACCAGTTTCAGTGCTGTCCCAGGCCCAGTCACAGGCCCAGTCCCTGGTCCAGTCCCATCCTTCCTCTACTATAGCGTTTATCCCCAAGTCCCCTTCCTTTCCCCAACCCCACGCCTTAATCCTGCCCACCTCCACTGTGACTCCTGTGCCCATGCCGAGATCCTCCATTCCACCCCCTCTGCCAGTCCCCTCAGCACCCCCGCTGCCTGGCAAACTGAATGCCAACATGAAGTCGAAGAGAACCAAAGCCTTTCACTGGGATACGGTGTCTCAAGACAAGATTGGGAAGTCTATGTGGTTGCGCAGCGACACAGGGAAGGTAAAGATCGACGGGCAAAGGCTGTTTGAGCAGTTTGCCATTCAGGACATGGGCGTCATCGGAGGCTTGGAGTCAAACAGCACCCTTCAGATCATGTTGAATCAGAAGGTGGCCCATAACTTCAACATCTTCCTCAAAAGCTTCCCAATGAGGCCAGATGAACTGAAGGACAAATTGTTCATTGTTACAGAAGAGGATGGAGGTCTCAGTGATGAGCAAATTGCCTCCCTCCGGAGGTACGTGCCCACTCCAGACGATATGTGCAATATTCCCTTCCTGAGTGCTCGACTAGATCTGCTTCTCACTATCAGAGAGCTCCCAATTAGTATGGAGGATCTGCAGCCACTCATTAACCAGAAGACTAGAATGTGCTCTCAGCTGTGGAACTGCAAGTCCTTCATGTCAGTCCTGGAGTATCTTCTCGTTGTGGGCAATTACCTGAATGAGAACGCGGGGAAGGAGAGAGCAAAGGGATTCCGCCTCTCATCTCTGACTAAACTGTCCCAACTGCGTGGGAAAGACAGGAAGTTTACCCTGCTGCACGCCCTTGTGGAGCAGATACTGTTACACAATCCCGACTTGGCTAAATTTTTTGAGGAGTTGACGGAATTTGAAGCCATTCCGGGGGTTCTGAAGAATGAGCTACAGAAGATTGTTCAGTACAAAAAGGCCTACAAGCCAAAAAATCAAGGCAATCAAGGCCTGAAGTTTCACAAAGACCTGAAGGTGAAATTTGCAGAACCACCAGAACAGGATTCTCAGGAGTTGTTTGGATGGGTGTGCACATTCGTCCGTGATTTCAAGAGGATTTATTCAGAAATTGTATCCTGAGGACCACGTGGGAAAAAAAACCCccgaaaaaacattttataccaATGTGTGGGAAGACTCCTTCGGTGTGATTTTACACATCCCAgtttttaatgtcatgttttgAAAAGATGAAAACTATATTCTACTGCTTCTTTACAAATGATTATACCCCCATTTCCTTGTGTGATGCTCATTGTTTGACATGTATTGTATGACCAAATATTGTTTTACCAAAACAAAGTCTACAAATTAATATTCAAATGCTGAagattgttttagtttatcTGTTGCTTGTATGAATTATGatctattaaaacaatttgGACTGAACTGTGGAGTTTTACAAGCTTGAACCAAGCTGAGACCTTAGACATGATTGAACAATTGAATAAATTGTAATCAATATACTCTATACTACATTTCATCTTAAGTTAAGATCCCAAAGGGGTTCTAGATgggctgtattttattaaacctgTATTGCATTTGTCCATAACATGAGGACTTGCTACTTTCCTCAATGCATTGGCATAGGGTTCCTGACATCTGCAAGAACAAGAGCTGAGTTCAGTTTAAAGTCCCTTGTGATTTAATCAGTTGCATTCTCTGCTTGTGCTGGAGTTTGGGATTTTCAGTTCCAAAGAAGAGCTTTCAGTACCACTGGGGCTTTGAAAACCAGCCTTGCACTGGTCAAGGAACTTTGACTTtctggagaaaacccacagcTTTTGATAGGCATTTCTGAAGTGCATTTTAGGAATACCCACCAAGAAGGGAGGAGAGATCAGGATACAAACCAATCTGCCAATACGTGCCCAATAACCAATACTCCTGCCAAGCAGCACTCCACAATCCTTCTGTCTGGCGATGCAGTTTCTCAAGACATTCCTGCTTTTGTAAGCCAACACTatattgatgcctttacttaactggatttttgcactttgttttgcacttctgttgtaagtcgccctggataagggcgtttgccaagaaataataataataataataataataataataataataatgataataactaTACTACAGAGCACCAAAAACCTTGTGATCacagtgtacattttgtaaGACTTTAGGTTTCAGTCTGTCAGTTCTCGAGATTCCTTTCAGTCTTCACTGTTTGCCCTCAAAGCTGgcttgtgaaaaatgaaaactgttggtttcttaattatttgtgttctgataaaaagagaaacaatgaaacaaagaaGTTCTCTACCCTTGGGTTTAATCTAGCTGTAAGGAGGATTTAGTCACTAGttgaaaaagtacaaatattCTTTCTGCAGAAACTTGGCAAATCAAATTGCATCTATATGAAGAAACCGTTGTGAGGATTAATTAGATGTTTGGATTCTGGAGACGCCGTTTGGTTTGCAATTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37805 lncRNA downstream 32103 52156790 ~ 52157079 (-) True G30237
TU37801 lncRNA downstream 87862 52101040 ~ 52101320 (-) True G30233
TU37799 lncRNA downstream 95527 52091632 ~ 52093655 (-) True G30231
TU37796 lncRNA downstream 121726 52067208 ~ 52067456 (-) True G30228
TU37793 lncRNA downstream 259803 51929106 ~ 51929379 (-) True G30225
TU37836 lncRNA upstream 28761 52278857 ~ 52279119 (-) True G30266
TU37840 lncRNA upstream 38794 52288890 ~ 52289123 (-) True G30270
TU37845 lncRNA upstream 75609 52325705 ~ 52326037 (-) True G30275
TU37846 lncRNA upstream 76065 52326161 ~ 52326391 (-) True G30276
TU37855 lncRNA upstream 87387 52337483 ~ 52338366 (-) False AMCG00008318
AMCG00008313 mRNA downstream 44455 52137169 ~ 52144727 (-) True AMCG00008313
AMCG00008312 mRNA downstream 119373 52068482 ~ 52069809 (-) True AMCG00008312
AMCG00008311 mRNA downstream 445384 51743409 ~ 51743798 (-) True AMCG00008311
AMCG00008307 mRNA downstream 673782 51510754 ~ 51515400 (-) True AMCG00008307
AMCG00008306 mRNA downstream 691970 51471219 ~ 51497212 (-) True AMCG00008306
AMCG00008322 mRNA upstream 2581 52252677 ~ 52293414 (-) True AMCG00008322
AMCG00008318 mRNA upstream 79140 52329236 ~ 52339097 (-) True AMCG00008318
AMCG00008321 mRNA upstream 94933 52345029 ~ 52345527 (-) True AMCG00008321
AMCG00008319 mRNA upstream 106405 52356501 ~ 52362043 (-) True AMCG00008319
AMCG00008317 mRNA upstream 116057 52366153 ~ 52370382 (-) True AMCG00008317
TU37623 other downstream 1661146 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 1914999 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2135080 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2288231 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 3905969 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile