RNA id: AMCG00008318



Basic Information


Item Value
RNA id AMCG00008318
length 1941
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00008318
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52329236 ~ 52339097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAAGGTCTAAACCTGAAATATACCAACTTGGAACAGAGGACTAACCACAGGAAACATGACACGGAGCGCCTCGGCTCAAAGTTCTTGGTGGTGCGGAGAGGACTACCCTTCAAGGTCACGTTGCTTTTTGAAGACCGGGGCTACAATCCAAACAAGGAAAAGCTAATTTTCACAGTCTTCCTAGgcaagtcaagtgtttCCTTTCCAGCCACCTTCTCGATGCACCAGTCCCAATCCCAGTGGAGTGCTCTGATTCAGCCCGGAGATATCCAATCCAGGTCTCTAAGCGTGCACATTGTCACACCCCCTGATGCTTGCATAGGCCTCCATACGCTTCACGTTCAGATTCTGTCTCCATACCAGTCGCACACCTATAACATTGCAGAGTTCATCTTGCTCTTCAACCCCTGGAGCCGTGTGTACATGGGCACGCCCCAGAACATGGTGTCTCGGTCGTGGGTTTTTGGTCAGTTTGAAGAAGGGATACTGGAGATTTGTTTGAATTTGCTGCAGCTCAGCCCTCAACACATGAGAAACCAACAAAAAGACTATCTGAACCGTTGGGACCCAGTGTATGTCAGCAGAGTGGTGTGTGCCATGATAAACTGTAAAGATGACAGGGGTGTCCTCAAGGGGAACTGGTCAGGAGACTACAGCACTGGAATGAACCCTTCTCAATGGACTGGGAGTGCTGATATTTTAAGACGGTGGGCGAGATCCCAGTTTAAGCCAGTGTGCCATGGACAGTGCTGGGTATATGCTGCTGTCATGTGTACAGtCATGAGGGTGCTGGGAATTCCAACGCGCGTCGTCACCAACTTCAATTCTGCTCATGACACCAACGCCAACTTGATCATTGAAGAGTTCTACAGTGAGAAGGGAGAAAAACTGCAGCTAACTCAAGATAGCATATGgaatTTCCATGTGTGGGTGGAGTGCTGGATGGCTCGTCCTGACCTGGGATATGGATTTGATGGGTGGCAAGTTTTGGACCCAACACCACAGGAAAGAAGCGAAGGTGTTTTTTGCTGCGGGCCGTGTCCAGTCAAAGCCATCAAAAAGAAACGTCTAGACATGATGTATGACACTCCTTTTGTGTTTGCCGAGGTCAATGCAGACATCCACACCATCATACTGAATAACAACTGCGAGGTAAACCGTGCCGTGGATGCCAGCCGGATCGGCTCTTTGATCTGCACGAAGGGCGTCGGCGTGGAATTACCGGAGAATATCACCAGTACTTACAAGGTTCCAAAAgATCCCATGACACGATATTCAGCACTCAACCGAAgaGGGATGAAGAGTGTAGAAATTACTATGATGATCCCCAAACTGCCAACAATCGGGGAAAGCATTTCCATCACTGTGACCATTGTCAACAAGGAGAAGACTGTCAAAACTGTTAAAGAAAACATCAATGCCCAGGCCAAAGAGTATAACCTCAGTCCAATGGCAACCTTCTGGGAAGAACACAGACGTATTCAAATGGGACCCTATGAAGTTAAGGACATACAACACCAGATTCTCTACTCACAGTATGCTAAGGCCTTGGTTGGAGACAATCTGGTGAATCTGGCAGTGGTGGTGGAAGATGAAGCTACACAAGACCGAGGGCTGGCCACAGAGGAGTTCAATATTGTCAGTCCTCGCATTACAATCCAGGTTGCCAACGAATATAacattgtgaaaaatgtggAGCAGAGTGGCCTTATTATTTTTACCAACCCTTTACCTGTGCCAATGAGTGGCTATATGATGACAATTGAAGGGATTGGACTGATCGAGGGGGAAATACAATCAGAACTCCCCATCCTGCAGCCTGCGAAGACAATTGAGAAAGTCTTCACTTTCACTCCCAAGGCGAGTGGTTTGAAAATGCTGCAGGCCAGCTTGGTATCCAGGGACCACACAAACATCAGAGGATTCAAGACTATCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37846 lncRNA downstream 2845 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 3199 52325705 ~ 52326037 (-) True G30275
TU37840 lncRNA downstream 40113 52288890 ~ 52289123 (-) True G30270
TU37836 lncRNA downstream 50117 52278857 ~ 52279119 (-) True G30266
TU37805 lncRNA downstream 172157 52156790 ~ 52157079 (-) True G30237
TU37881 lncRNA upstream 41959 52381056 ~ 52381966 (-) False AMCG00008325
TU37882 lncRNA upstream 44376 52383473 ~ 52384567 (-) False AMCG00008325
TU38019 lncRNA upstream 740487 53079584 ~ 53082902 (-) True G30409
TU38028 lncRNA upstream 806088 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 1072897 53411994 ~ 53416431 (-) True G30479
AMCG00008322 mRNA downstream 35822 52252677 ~ 52293414 (-) True AMCG00008322
AMCG00008314 mRNA downstream 79140 52189182 ~ 52250096 (-) True AMCG00008314
AMCG00008313 mRNA downstream 184509 52137169 ~ 52144727 (-) True AMCG00008313
AMCG00008312 mRNA downstream 259427 52068482 ~ 52069809 (-) True AMCG00008312
AMCG00008311 mRNA downstream 585438 51743409 ~ 51743798 (-) True AMCG00008311
AMCG00008321 mRNA upstream 5932 52345029 ~ 52345527 (-) True AMCG00008321
AMCG00008319 mRNA upstream 17404 52356501 ~ 52362043 (-) True AMCG00008319
AMCG00008317 mRNA upstream 27056 52366153 ~ 52370382 (-) True AMCG00008317
AMCG00008325 mRNA upstream 42592 52381689 ~ 52384302 (-) True AMCG00008325
AMCG00008323 mRNA upstream 47263 52386360 ~ 52388370 (-) True AMCG00008323
TU37623 other downstream 1801200 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2055053 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2275134 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2428285 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4046023 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile