RNA id: AMCG00008319


Basic Information

Item Value
RNA id AMCG00008319
length 1158
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00008319
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52356501 ~ 52362043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGAGACGCTGATCACTGGGCAGACCTCGGAGGATCTTCTGGCCGACTTTGAGTCCATTTTGGGAGCCGGCAGCATTGAGTTAAACGAGCAGCAGATTGTCATCATCTCCACCCCAGGAAATGTGGACATCCATTCCGCAGCCTCCACCAGCACTGGGGAGATCCTGCTGTTCGCCACCCCGCAGGGCCTCAAGTCCTCCATGGAGAAGTCTCGCTATGATACCTCTCTGAATCTCACCACCAAGCGCTTCCTGGAGCTCCTAGCCAAGTCACCTGATGGGGTGGTTGACCTCAACTGGGCCTCGCAGGTCCTTGAGGTCCAGAAACGCCGCATCTATGACATCACCAACGTCCTGGAGGGCATCAAGCTCATTTCCAAGAAATCCAAGAACAACATTCAGTGGCTTCTGCTGAAGGAGGTGTCGGACCTGGGGGAGGCGGAGCAGAGACTGGACGAGCTCATTGCGAAAAGTAACCTGCAGCTCAGACTGCTCACCGAGGATCCTGAGAACAAGCAATATCCTTTTCAATTCAGGATGCAGGGGATTTCCCCTTATTACACGCTGGCATATGTGATGTGCCAGGACCTGAGGAACACTGTGGACCCCCCCGACCAGCTTCTGATGGTGGTTAGGGCTCCTCCAGAGACACAGATGCAGGTTTTAGACCCCTCAGAGGGGTTTCAGATCTCTCTCAAAAGCACCCAAGGCCCCATCGATGTGTTCCTGTGCCCAGAAGACAACGCTGGGGTCTGCAGCCCGGTGACAGGAAATAGCCCCTCCAAAGCAGCCAGTCAGGCATCGCCTGCTCCCGCCCCTAGCTCCACAAGCACCAATGAGCAGCCGCAGTGCAGCAAGCCCCAGGAAGTGACATCGCCCCCTCGGGAGGCTGCACTGCTACTCACAGAGTCTTTGATGGCGGCGGACGCCTTCTCCAGTCTGGGAGCGTTGCCCGACTTTGACCTGGCCACCCTGCCGTCCTCTGATTACCTGCTGGACAGGAGTCCTGAGGAGTTCTCCTCACTCCCGTTGGACAGCTTCATTAATCTTTCCCCTCCCCAGGTTCACGACTACCACTTCGGGCTTGGGGAGGGCGAGGGCATCAGCGAACTCTTTGACTGTGATTTCGGGGATCTGGCGCCCCTAGACTTTTGA

Function

GO: NA

KEGG:

id description
K17454 E2F1; transcription factor E2F1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37855 lncRNA downstream 18135 52337483 ~ 52338366 (-) False AMCG00008318
TU37846 lncRNA downstream 30110 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 30464 52325705 ~ 52326037 (-) True G30275
TU37840 lncRNA downstream 67378 52288890 ~ 52289123 (-) True G30270
TU37836 lncRNA downstream 77382 52278857 ~ 52279119 (-) True G30266
TU37881 lncRNA upstream 19013 52381056 ~ 52381966 (-) False AMCG00008325
TU37882 lncRNA upstream 21430 52383473 ~ 52384567 (-) False AMCG00008325
TU38019 lncRNA upstream 717541 53079584 ~ 53082902 (-) True G30409
TU38028 lncRNA upstream 783142 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 1049951 53411994 ~ 53416431 (-) True G30479
AMCG00008321 mRNA downstream 10974 52345029 ~ 52345527 (-) True AMCG00008321
AMCG00008318 mRNA downstream 17404 52329236 ~ 52339097 (-) True AMCG00008318
AMCG00008322 mRNA downstream 63087 52252677 ~ 52293414 (-) True AMCG00008322
AMCG00008314 mRNA downstream 106405 52189182 ~ 52250096 (-) True AMCG00008314
AMCG00008313 mRNA downstream 211774 52137169 ~ 52144727 (-) True AMCG00008313
AMCG00008317 mRNA upstream 4110 52366153 ~ 52370382 (-) True AMCG00008317
AMCG00008325 mRNA upstream 19646 52381689 ~ 52384302 (-) True AMCG00008325
AMCG00008323 mRNA upstream 24317 52386360 ~ 52388370 (-) True AMCG00008323
AMCG00008324 mRNA upstream 26752 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008329 mRNA upstream 131298 52493341 ~ 52505322 (-) True AMCG00008329
TU37623 other downstream 1828465 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2082318 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2302399 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2455550 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4073288 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile