RNA id: AMCG00008323


Basic Information

Item Value
RNA id AMCG00008323
length 834
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00008323
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52386360 ~ 52388370 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTTCAGAGCGCTGTGCGGTGGTCAGGTCATGGCAGCCTGTGGGGGTGTATGGGATCGGCGGTTCCTTGCAGCTCTGGGTGGGGAGTTTGTGGCCGTGTTCCTCTTCATGCTGATCAGTTTGGGTTCCACAGTGTCTCTGGATGACGGCGCGGTGCCCTCGACCCACATCGCCCTGTGTTTCGGGTTTACTGTGGCTGTGCTGGTCCATTCATTTGGACACATCTGCGAGGCCTGCCTCAACCCTGCCGTGGTGCTGGCCATGGTCCTCACCCGAAAGATCACCATCGCCAAAGGGTTCCTCTACATTGTCGTCCAGTGCTTGGCTTCCTTTACCGGGACGGCATTTGTGTTTCTAGCAACACGAGCAGAGTACAGAAAAGCTTTCGGAGTCACTAAGGTGAACACCAGCATCACCGTTGGCCAAGCTCTGCTCATTGAGAGCACTACCACCCTCCTCCTGGTCTTTGCACTCTTTGCCTCCTGCGATCGGAACAGGACAGACGCCCGACTCCCGGCTTCCCTGATCATTGGGCTGGCAGTGGCTGCGGGACACCTCTTTGCGGTGCCCTTGACTGGTGCCAGTATGAATCCTGCCAGGTCACTGGGGCCCAGCCTGCTGTTCTGTGAGTGGGAGCATCACTGGGTGTACTGGGTGGGACCCACTATGGGAGCGGTGGCTGCATGCTTCCTGTACGACTTCCTGTTGTGTCCCGACCCAGAGCTCAAGAGGCGACTCAAAGCACCCCCACACCTGGTGGAGAAGCCGGAGGAAAAGGAGCTGTTCGAAGTCGGGGTTAGAGTAACGCCGGAGGACAAGGATGGGATCCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
K09872 PIP; aquaporin PIP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37882 lncRNA downstream 1793 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 4394 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 47994 52337483 ~ 52338366 (-) False AMCG00008318
TU37846 lncRNA downstream 59969 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 60323 52325705 ~ 52326037 (-) True G30275
TU38019 lncRNA upstream 691214 53079584 ~ 53082902 (-) True G30409
TU38028 lncRNA upstream 756815 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 1023624 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 1042582 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 1098471 53486841 ~ 53491107 (-) True G30505
AMCG00008325 mRNA downstream 2058 52381689 ~ 52384302 (-) True AMCG00008325
AMCG00008317 mRNA downstream 15978 52366153 ~ 52370382 (-) True AMCG00008317
AMCG00008319 mRNA downstream 24317 52356501 ~ 52362043 (-) True AMCG00008319
AMCG00008321 mRNA downstream 40833 52345029 ~ 52345527 (-) True AMCG00008321
AMCG00008318 mRNA downstream 47263 52329236 ~ 52339097 (-) True AMCG00008318
AMCG00008324 mRNA upstream 425 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008329 mRNA upstream 104971 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008331 mRNA upstream 183750 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008332 mRNA upstream 238145 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008340 mRNA upstream 888009 53276379 ~ 53281571 (-) True AMCG00008340
TU37623 other downstream 1858324 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2112177 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2332258 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2485409 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4103147 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile