RNA id: AMCG00008324


Basic Information

Item Value
RNA id AMCG00008324
length 6858
RNA type mRNA
GC content 0.44
exon number 26
gene id AMCG00008324
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52388795 ~ 52425671 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaacactgttaagaGGAAAGCCTTTATGAAAATACGTTTCTGTCCCGTCAGGGACATTCCTGCAAATCACGTGACACGCACCACTCCTGCAGCTGACGGGGAAACCTGCTCGAGCGCGTCTCGGAAAGATTGAGGTGCGGCCTCGCTGTCAGTGTCCAATCAGATGGCGCACAGCGATCTGCGTGCGGCTGGGGTGCGTTAGCGGCCGGGCGCGTCACGTCGTGCGTAAGGGCGCGTCACCTTGCGTGCTGTCACGTGAGAAGGTTACGAAGATGGTGGAAGTTTCTTGCTAGGAGTGAACTGGAgtggaaaccaaaacaaacaggacATCGGACTTCGGGAAACGGCACGGATATACCACGTTGACAACAGCGCCACATTGACACGGCACTGGCAGTGTCCTGCGACTCCGCGGTTGATCACCCAGCCCTATGCTATGGCCTGTAGCACTGCCCGAACAGGCCCTGTCAATGGATTTACCATGAAGGCCCAGCTTCAGATCATTGTACTGTCTGCAAagttgaaggaaaacaaaaagaactgGTTTGGGCCAAGTCCTTATGTGGAGGTTGCAGTGGATGGGCAGTCAAAGAAAACTGAGAAATGCAACAACACTAATAGCCCCAAATGGAAACAGCCTCTCACTGTCATCGTGACCCCCTTCAGTAAGTTAATCTTTCGGGTCTGGAGTCATCAAACCCTAAAGTCTGATGTTTTATTAGGAATGGCCACATTGGATGTCAGTGAAACCTTGAAGTCCAACAATATGAAAATCTCCGAGGTTGTGCAGACATTGCAGCTCTGCAGCGATAAAGACCAGACTGATGTGGTGGGAGACTTGTCGGTCTGCCTGGATGGGCTGCAAGTGGATCCAGAAATGTTTGCATCTGTGGACATGAACAGTCTGAGTACAATTCCAAATGGGGATTCACGGCAGAACAGTGACTGTGTTGTGAGGCCGAAGAGAGACGCGTCCCCCTCTGCCGAGAGCATTGAGGACATCACTACACCAAACGGCAAGGCTGTGAACGGCACGGGTTCCCCCGCTCTCTCTGGGGGCGGTTCCAAACCCTTGCGGCCCCCGAGACCTTCCCGACCCCCTCCACCCACCCCCCGGAGACCTACCTCCTCACCAGCACCTAGCACCTCTGCGCCCAGTGAAGGCAGCAACTCTTCCAATTTGGAGGCTGCGGTGAGGATATCAACAGCAGGGGCCTCGGAGTTAAATCCACCCAGCTTTACATCACAGGACCCTGGGTCAGCCGGCACCAGGCCGAGTGCGGCCGTAAACCCAGCTGCTCCCCTTGTCAACCCGGTTGGCACAGGTCCTCTGCCCCCTGGTTGGGAGCAGAGAGTAGACCAGAACGGCCGTGTTTATTTCGTAGATCACATTGAGAAGCGGACAACCTGGGATAGGCCCGATCCACTGCCTCCGGGTTGGGAGCGACGTGTCGACCCCATGGGCAGAATATACTATGTCGATCACATCACAAGAACAACAACCTGGCAGCGCCCCACTGTCGAGTCCGTGAGAAACTACGAGATGTGGCAGCTGCAACGCAATCAGTTGCAGGGTGCCATGCAGCAGTTTAACCAGAGGTTTATATATGGGCTCCAAGATCAAGTCCCAGCGACACAGAATAAAGAATTTGATCCACTCGGGCCTTTACCACATGGATGGGAGAAAAGAACCGACACGAATGGCAGGGTGTACTTTGTTCATCATCCAACGCGATCCACTCAGTGGGAAGACCCCCGAACCCAAGGACTCCTGAATGAGAAGCCGCTTCCTGAAGGCTGGGAGATGAGGTTCACAGTGGACGGTATTCCCTACTTTGTGGATCATAATCGAAAGACGACAACGTACATTGACCCCAGAACCGGAAAGTCCTCCCTTGAAAACGGACCCCAGATCACCTACGTACGAGACTTCAAAGCCAAAGTCCAGTACTTCAGATTCTGGTGTCAGcAACTGTCGATGCCCCAGCACATCAAGATCACGGTGACTCGGAAAACCCTGTTCGAAGATTCCTTTCAACAAATAATGAGCTTCAATGCCCAAGATCTCAGACGGCGCCTATGGATCATTTTTCCAGGGGAGGAGGGTCTGGATTATGGAGGGGTCGCAAGGCAGGTGTCCAGCTGTTTTGTCAAGCAGATGGAGTGGTTTTTCCTGCTGTCCCACGAGGTGCTGAACCCCATGTACTGCTTGTTCGAATACGCGGGGAAGGACAACTACTGCCTGCAAATCAACCCAGCCTCCTACATCAACCCCGACCATCTCAAATACTTCAAGTTCATTGGCAGGTTTATTGCCATGGCCTTGTTCCACGGGAAGTTTATCGACACTGGCTTCTCTCTGCCTTTCTACAAACGCATCCTGAACAAGCCTCTGGCACTCAAAGATCTGGAGTCCATTGATCCTGAATTCTACAACTCCCTCATCTGGATTAAAGAGAACAACATTGAGGAATGTGGCCTGGAGATGTACTTCTCTGTGGATAAAGAAATCCTCGGCGAAGTAACAACACACGAGCTGAAGCCTGATGGAAGCAATGTTGTTgtcacagaagaaaataaagaggaGTACATCAGGCTGGTGGCCGAGTGGAGGTTGTCCAGAGGAGTAGAGGAGCAAACCCAGGCTTTCTTTGAGGGCTTCAATGAAGTTCTTCCACAGCAATACCTGCAGTACTTTGATGCTAAAGAACTAGAGGTGATGCTGTGCGGGATGCAGGAGATCGACCTGACAGACTGGCAGAGGAACACGATCTACCGCCACTATGCCCGCAGCAGCAAGCAGATCCTGTGGTTCTGGCAGTTCATTAAAGAAATGGACAACGAGAAGCGCATGCGGCTGCTGCAGTTCGTGACGGGGACCTGCCGCCTGCCAGTGGGAGGATTTGCTGACCTCATGGGGAGCAACGGCCCTCAGAAGTTCTGCATTGAGAAAGTAGGCAAAGAGAACTGGCTGCCTAGAAGTCACACATGCTTTAATCGTTTGGATCTGCCACCCTACAAGAGCTATGAGCAGATGAAAGAGAAACTGATGTTTGCGATTGAAGAAACAGAAGGGTTTGGACAGGAGTAAATCGCCGTGGACACCCGGGCTGCGCCGCGTCGCTTTTCACTTTTTGGTACAGCAGTTCTATCAGCGCCGACCCCTTTCCCTGCACTGGCTGCGTTCGGTGGTTTCATCTTCCACACTTCAGCCGGACTGGCCATCTCCTCTCGTTCTGGCCTGGGCTCGGTTGTGGAGTACTTTCTCTGCATTGACCGTCATCTGCGAGAGAATTTCCTAGCTTTGAATCACCAAACAGATGGATACAACAGCCGGCCAGGGTGAGGAGTGCAGTGAGACTGAATTGCCCAGTGTTTGCGTTCTTATCCAACATTTGCATAGCAGTGCCCCAGCGCCCCAGTGCCCCAGCGCCCCAGTGCCCCAGCACAGTAGATTctcattattttacagtgtgcttaatagttaaataaatgcaaacttaAGATTCaataacttaattttttttttccttcttcagtagaaaaatgtacatgaaaGCCTGAGAATCATGCCATATAACCCACATATTTTTAGTGCTTTTGTTCGTCAGATCATCTTAAATGGGTGTAATTGGAGAgttctgatatttatttattcttgttggTGAATCTGCAACATTACAACTGTGACTTGCTGATCGTAAAATTAAGGGATAGCAATGATCTTGCATTCCTTTAATATCTTGAGCATTGTCTAAAACCTTTCATTTTCTAATTTACTTTTTCACAGCAGGgaaaaaagcactttaaaaaaaaaaagtttatttggaaaaataaagggTTTTAATGGGTTTGCGGTGCTTAGAACGATGCACAGGTGGGGATATGATAAGAGCCTGTTTGAGGGCAGTAGTTTTGGCTATACACATGGCAGCATTGAATGGCTAGCATTTGTATTGATATCCCTTTCTCTTTTCATTTACCTGATATTGATGAATTTCTGCAGTTTTGATTGTGGGGGGaagagaaatgtgaaatgtatgcagcatatatataaaaaaaagaattagcCTTGAGCTGTGAAACTCATGATAATTATGAAAAGGATGCATTTTCATTGGTAGCCTGTTAcaagtgaaatgtgttttacgTACTGTAAGTACCTTATATAAATTGGAACATAATAAAAGGTAAACTATAAAACATTGATCAAATGTTCTCACTTTGGAAAAGCTTATTTACATCTAGTTCAAACAGGCATGTAATTAGCAGAAAGCAGAAGTGCACCGCAAATAATCTCCCCTTCTCGGTAATTTCATTGAATAGTTTTAATGTAGCCGATAATTATGGTCTTGTAAAATGTCTGCCGTGGAATCTGTAGTCTTGAAGCCATACCTTCATCAGACCCTGTATAACCCACTAGTGTGCCATCTAATCTGCTTGTGTCACCAATTAgtctattaaaatgtaacataacTCTTAAACTGAGAGAGGCGACTGccctatatttttaaatattataaggAAATAGAATAAATTAGTGTGGCAGCCACAGCCCTAGTTTTATAGGGCCTTgctgtttgaattatttttatggTCTGTGTTTATTCCCTGTAAAAGCAACgctttgtaaatgtgtaaattcaTTGTCTGGAGTTTTTGCTTTCAAACTGGATGCAACGCCGGTCCCAGATCTAAATCCATGTAAGTGGACAGCAAAGAGCTTGATATGTTACTGATGCAGGTTTAGTTTGCAAAGATTACCTAGTATGTATCCGCCGTGGAAAATGAAGTAAAGCATTTGCCGTCAGCAACAGCCATGAAAGATTTGGAACCCAAAGCATGAGTGATAGTATTGGAGACATTGTTCCTAGAAAGAGTTTGGATGTAAGACTTGTACACTTTAtattattctatatttttaatcatatcTGTTTGGAAGCAGTAGGCCATTCAAATTTGTGTCCCCAAACTGAATCTGcctaaaatgtctgtttttcctgTAAATGTTAATCAGAAATGAACATCACAACATCTCGAAAGCAAATGAATGTTTTCTAAAAGTGTGGGATACAtgcatagatttttttatttcgtCTTTCTCAAGCTCTTATTCTTTTCtttcagcttctcttttccagtgtttgtttggcTGCAGTATTTTACATATTGTGCTCTTTGGCCGATCTGCAACAAGATTGCTGTGTGTAACATCAGGTTTTCACTGTCCTTTTGTTCAATCGATATCTTTTTATATCCCTCCTATTCTCAGGTAGAGTCATCCAGGTCATTCAGTCGTTTTTCACTATTAaatcactatttattttccttgatttGTGGTTCCTTTTCCTGCTTCATAGGCTATCACTGTTTGCTTCATCTAACATAGGGAGTGCTTTTGTAAGGAAATGCTGGTCTCTTTTTATACCCTATACtcttttttcatgattttggttattgtttttgtttaaaggaggagtttgcaaaataaaatctagGAACCTGAAGAGTGCATAGCCCAGTTAACTTCTCGTTTTCTGTTGAGAAGAGGGATCTTGTCCACCCTCTCACCCCCCCTCAAAGCAATTTGATTAAAGgtgtattatttaatcaaacTACTGCATACTCAGTCTCTCACCGTGTGcctgtacaaatatatacatgcacagtttTTATATAGGCAGTGGAAGCAAGTGAATGACTCTGGGCTGTTTAAAACACACCAGGCCTGGACAATGCGTGTTCCACCTGTGCATAATTGCAGATATTAGACCAGTGCTGCAGAGCCTACAGTTCAGCTGAAAGCTTTATAGGCAGGTAATGCTCTCTAAAGACTGTTAGTTGACATTGAAATCTAGTTTTCAGCAGTTCATTTTCCTGGgccacagtttttattattcattttgattagtagaaaaaaactgaatttgtttaaaatggatATCTGAGTTTTATTTACAAGGGATGTTTTAAATagaattaatcttttattttaatacatttttaatcttcatCAGCATGTTCTCCAGTGGTGAAATGCATGtctaagcttttttttttttttgtggcttcTGGTTTAAAATGCAAGCTTTGCATGACAGTGTGCAAATTTCGAAACCTACACGTTCCTTTCAACTTTGCAACATATCTTCAGTACCTGTGAAGTGCAGAAGTTCCGTCTGTGTGGTTACTTTTCACAGATCTAAAACCTGACCTGGGTTAACTGATTTCAGCGATTGGCTACATTTGGCAGTGTCCACTTTGAAGCAAGCACATTGTAGCACAGTTGTGTAGTGTTGCAGAATAGAGATTGCATTGTctgattaacatttttcaaaggaATGAAACTGTCCTGTATTTAGTTTAAGCAGCCCCGTGGTAAGAGCCATGTAGACATCAGAGGAATCCAATTTACACCAGCCCTTCTCATGAGGATGGTGGAATATTTAACTATATCCCAGGGAAGAAAATGTagatatatagtttatattgcgttgcaaataaaatgtgatcacctttttttatttatgtgttgaagtatagttttgtttttgttttgtgtgccccccccccaaaccccGATTGAAAACTTGATAATAAATGCTAAACTATTCTAATCTCCCCTGTGTATAATAAATGAAGGCTgtaaatcatgttaataatgAATTCACtgtaatcttttttgtttttgtaaattctAATCTTTTAGTAAACTGGGGATAATGGTTTAAATGCTATTTAAGGattctttacaatgtttttttttgtttttgttttatctgtacAGTACAAGTTggtgtaaaaaatgttttgctctgtttagaaatttaagaaataaaactataaGGCTAA

Function

GO: NA

KEGG:

id description
K05632 ITCH, AIP4; E3 ubiquitin-protein ligase Itchy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37882 lncRNA downstream 4228 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 6829 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 50429 52337483 ~ 52338366 (-) False AMCG00008318
TU37846 lncRNA downstream 62404 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 62758 52325705 ~ 52326037 (-) True G30275
TU38019 lncRNA upstream 653913 53079584 ~ 53082902 (-) True G30409
TU38028 lncRNA upstream 719514 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 986323 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 1005281 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 1061170 53486841 ~ 53491107 (-) True G30505
AMCG00008323 mRNA downstream 425 52386360 ~ 52388370 (-) True AMCG00008323
AMCG00008325 mRNA downstream 4493 52381689 ~ 52384302 (-) True AMCG00008325
AMCG00008317 mRNA downstream 18413 52366153 ~ 52370382 (-) True AMCG00008317
AMCG00008319 mRNA downstream 26752 52356501 ~ 52362043 (-) True AMCG00008319
AMCG00008321 mRNA downstream 43268 52345029 ~ 52345527 (-) True AMCG00008321
AMCG00008329 mRNA upstream 67670 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008331 mRNA upstream 146449 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008332 mRNA upstream 200844 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008340 mRNA upstream 850708 53276379 ~ 53281571 (-) True AMCG00008340
AMCG00008339 mRNA upstream 874805 53300476 ~ 53303340 (-) True AMCG00008339
TU37623 other downstream 1860759 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2114612 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2334693 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2487844 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4105582 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044574 True 3358 mRNA 0.50 23 NC_007134.7 43535224 ~ 43595956 (-)