RNA id: TU37881


Basic Information

Item Value
RNA id TU37881
length 911
lncRNA type sense_over
GC content 0.44
exon number 1
gene id AMCG00008325
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52381056 ~ 52384567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACATGATGGAAAGGTGACAAGCCCCCAgccggaggaggaggaagaggaagaggaggaggaagaggaagatgaGGGGCTGCAGGAACCTCAAGCTGTGCTGTCTATCACAGTGGGAGAGAAAAGAGGTAGAGGAGACATGGAggatgaagaagaagaggaggacaATGAGGGAGGGACTTCTGAAGGCATGGCGAGCACCACAGACCTGACGCAGCTCCAGACCAGCACTGACGTCACCCTGCTTACCGTGCCCGTCTTCATCGAGACTGCGGACTGAGGGAGTTCGAGATGTGCCTGGAAGAGCCTCAGGCAGAGGAGATGTAATGGCATTTCAAGAGAGCGAAATCTCTGAATCCCAAGCACTTGGGCCCAGTAGTCAGCATGTGTTACATTCCCCAGGACTACGGGATCCCCACAGGTTTAGAGTCTGGACGAAACACATTGTCCACACATCGTGATCAGTTCATGCAGCAGAGATCCGAGTATCAATCACTTTGCTATGCTCCACAAGGCTTTTTTGGTACTTAAatatttcagcactgttttatattaaaacgtAAACCTACATAAACGTAAAAGTGTGTTTCTATAGTTCAAAACCAAGGGACAGCTGTAAATCAGAGGCAGTGTAATACTGCAGTAACAtctaatgtgtatttataatgtttattttatatattgtatatactgtatataatgcaCATTTCCAATTTATACAGAATGTGATCAATTCCCAGACTGTTTTTGATTTCAGTGTTCCGTTTCATTGCTGCTCGTTTGCACAGTGCTGTCATTGACATCAGATTTGACTTCCCAATTCCCAGTAATCCCAATTACTTCAAGCTGCTTAAAATGCTGACGGGGCTGATTTGTAAGtgatttaatttactgaaagaattatttaaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37855 lncRNA downstream 42690 52337483 ~ 52338366 (-) False AMCG00008318
TU37846 lncRNA downstream 54665 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 55019 52325705 ~ 52326037 (-) True G30275
TU37840 lncRNA downstream 91933 52288890 ~ 52289123 (-) True G30270
TU37836 lncRNA downstream 101937 52278857 ~ 52279119 (-) True G30266
TU37882 lncRNA upstream 1507 52383473 ~ 52384567 (-) False AMCG00008325
TU38019 lncRNA upstream 697618 53079584 ~ 53082902 (-) True G30409
TU38028 lncRNA upstream 763219 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 1030028 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 1048986 53430952 ~ 53434101 (-) True G30486
AMCG00008317 mRNA downstream 10674 52366153 ~ 52370382 (-) True AMCG00008317
AMCG00008319 mRNA downstream 19013 52356501 ~ 52362043 (-) True AMCG00008319
AMCG00008321 mRNA downstream 35529 52345029 ~ 52345527 (-) True AMCG00008321
AMCG00008318 mRNA downstream 41959 52329236 ~ 52339097 (-) True AMCG00008318
AMCG00008322 mRNA downstream 87642 52252677 ~ 52293414 (-) True AMCG00008322
AMCG00008323 mRNA upstream 4394 52386360 ~ 52388370 (-) True AMCG00008323
AMCG00008324 mRNA upstream 6829 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008329 mRNA upstream 111375 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008331 mRNA upstream 190154 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008332 mRNA upstream 244549 52626515 ~ 52649562 (-) True AMCG00008332
TU37623 other downstream 1853020 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2106873 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2326954 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2480105 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4097843 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile