RNA id: AMCG00008332


Basic Information

Item Value
RNA id AMCG00008332
length 1137
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00008332
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52626515 ~ 52649562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAATTGTTACAGTTCCTCTTCTTTTCTCACCCAGATCCAGGAGATGACACACCCAGACGGCTCACATTATGACGCCACCCATCAGGGCCCTCTGATAAACAGATCACCTAGGATACTGTCACATCACATGAGCACTCTGTCCCAGCTGAACTCTCAGGTTGGCCTGCGAAGTGCCGTTACCCATGGTTCCCCCTCACCTCCAGGAAGTAAATCGGCCACACCCTCCCCCTCCAGCTCTGCCCAGGAAGAGGAAACTGATTCCCATTCCAAGATTACTGGGGAGAAAAGGCCCTCTTCAGAAATGATCAAGAAACCCAAGccacagaaaaagaagaagaagaaggaccCCAACGAGCCGCAGAAACCCGTCTCAGCCTATGCGCTCTTCTTCAGGGACACTCAGGCCGCCATTAAAGGACAGAACCCCAATGCTACCTTTGGAGATGTCTCCAAAATCGTGGCCTCAATGTGGGACAGCCTGGGAGAGGAGCAAAAGCAGGCATACAAGAGGAAAACAGAGGCGGCCAAGAAGGAGTACCTGAAGGCTCTCGCCGCGTACAGAGCCAGCCTGGTTTCCAAGAGCTACAGCGATCAGGTGGAGACGAAAAGTGCCCAAACAAGCCAGCCTTCGCACATgatgccaccaaaacagcccttgTACAGCGTGCCACCCCAGCCCTCCTCCACGTACCTGGGCCCGGGATCCTTCCCCCTGTCTGACCTGCAGAGCTACGGGGCCCCCCAGCGCCACAGCCTCTCCAGGACCCTGAGCCAGTCGCAGATGTTGCCCAGCATGAGTgcctctcccccctcctctttTCAGATCAGCCCTCCTCTGCACCAACAGCTCTCCCTGCACCAGAGCTCCCTCCTCAACCAGCCAATCCGCATGCAGCAAGTCCAGTCGCAGCCAATCATCTCCCATCAGATGGGGCTCCAGGCTTCtctccactcacctcctccaggCCAGCAGGGTTTCTCTCACATTCAGTCAGAGTATCAGAACAATGTTGGCTCCCAGTCTCCAGGATCTTCTAACCCGGTGGGGGGACAGAATCCAGAATGGGACAGCGAGTACTGCAATCGGGAGTGCGGCGTCAACCACTGCAGaaggaTTTCAAGCAAGTCCTAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37882 lncRNA downstream 241948 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 244549 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 288149 52337483 ~ 52338366 (-) False AMCG00008318
TU37846 lncRNA downstream 300124 52326161 ~ 52326391 (-) True G30276
TU37845 lncRNA downstream 300478 52325705 ~ 52326037 (-) True G30275
TU38019 lncRNA upstream 430022 53079584 ~ 53082902 (-) True G30409
TU38028 lncRNA upstream 495623 53145185 ~ 53148173 (-) True G30417
TU38106 lncRNA upstream 762432 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 781390 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 837279 53486841 ~ 53491107 (-) True G30505
AMCG00008331 mRNA downstream 42490 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008329 mRNA downstream 121193 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008324 mRNA downstream 200844 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008323 mRNA downstream 238145 52386360 ~ 52388370 (-) True AMCG00008323
AMCG00008325 mRNA downstream 242213 52381689 ~ 52384302 (-) True AMCG00008325
AMCG00008340 mRNA upstream 626817 53276379 ~ 53281571 (-) True AMCG00008340
AMCG00008339 mRNA upstream 650914 53300476 ~ 53303340 (-) True AMCG00008339
AMCG00008341 mRNA upstream 656236 53305798 ~ 53357218 (-) True AMCG00008341
TU37623 other downstream 2098479 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 2352332 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 2572413 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 2725564 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 4343302 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032731 True 2198 mRNA 0.52 9 NC_007113.7 38068069 ~ 38080075 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_18185156_18206837.mRNA True 1581 mRNA 0.57 8 CI01000340 18184910 ~ 18206837 (-)