RNA id: AMCG00008339


Basic Information

Item Value
RNA id AMCG00008339
length 1476
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00008339
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 53300476 ~ 53303340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAGATGTGCACAAATGCACGTTAGCATTTGATAACAGGAATCCAGATACGGTGTTCACTAGAAAAGATGCTGGTATTGTGCGGGCTGGTGTTGGTTTCCACACCGGTCACATTGCAGTCACAGACGTACCTCTGGAAGGATGACGTCACCGATGAGCCAGTCACGTGCGACAAGTGTCCGCCTGGCACGCGCGTCCTGCGGCACTGCACGAGACACAGCCGCACCGCGTGCGCGCCCTGTCCCGCGCTGCACTACACCGAGTTCTGGAACTACCTCGAGCAGTGCCGCTACTGCAACAACTTCTGCGCAGACACGCAGCTGGAGAAGCAGCCGTGCAGCAGCACCCACAACCGGCTGTGCGAGTGCAAGGCTGGCTATTACCTGCGGGATGAGATGTGCGCAAAGCACAGTGCCTGCCCTCCTGGAGAAGGCGTCGCTGTGAATGGAACTGCGTATGAAGATGCGCAGTGTGAACTGTGTCCGGATGGCTTCTACTCCTCGGTGGCCTCCAGCACACAGCGCTGCCTCCAGCACAGCCAGTGCCAGCCAGAGCAGAGGGCCATAGAGGGCGACGAGAAACAGGACACCTTCTGCACTGCCTGCACGACACCTGTGAGCATCCACACGGACAGCGCTGAAGCTATACAAATCTGCAGTAAAGCCATAATGGAGTATGTGGCTCACCAGAGCATTACACCAAGGAAGCTCAGAAAACTTAGACACATCGCTGAgaggaaaatacaacaaaacggACAGAATATGGGGAATAAATCTCTTCTGGAATTGTTTCAGGCCATTGCAGCTAATGAGTACAATGATAAGAAGACTGTTGACCTGATCTTTTCCATGTTGCAGAAAGCAAACTTGACTCACCTGCAAAAGAAAGTTATGAGATTGTTCATAGCTAGATAGATTTCAATAAGATCAGAATCCAATCCTCCCACAGTATTAGTATTCCTCCActtagtattttacagtattccGCAATACATTTATAGTACATCTCATTTTCTCAAACTTAAATGAACTGCAGGAGTCTGCCTTTGCTCAGGAATGACATTTCAGAAGGTTACatcatttcatttgaattcattgtgtttatatgtttggatttaaattatttaaagaaaaaatgatttattatggTCTACAAAGCTAGGATATTCTAAACACCATAAGCTAATGTTATTAATGACtgccatttttttccccttcaaatGTCGAAGATACTGGCAATCCACAAGAAAACTGTAGTTTTAatccaataaaatgttttttattaaactttgtCATAGGCCAATTATATTGTATCATGCATTTTCAGagaatttcaatgtttttatttttcatagacaacattgtaataaaaggtatttttgGATAACAAACTCTTTTGATTGGTCGGTTTTCAGACATTTTACTTCCTTTCGTCTCCTCTTTAAGACTTCAGCTCTGAGACATTTCTCTGGCCTGC

Function

GO: NA

KEGG:

id description
K05143 TNFRSF6B, DCR3; tumor necrosis factor receptor superfamily member 6B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38028 lncRNA downstream 152303 53145185 ~ 53148173 (-) True G30417
TU38019 lncRNA downstream 217574 53079584 ~ 53082902 (-) True G30409
TU37882 lncRNA downstream 915909 52383473 ~ 52384567 (-) False AMCG00008325
TU37881 lncRNA downstream 918510 52381056 ~ 52381966 (-) False AMCG00008325
TU37855 lncRNA downstream 962110 52337483 ~ 52338366 (-) False AMCG00008318
TU38106 lncRNA upstream 108654 53411994 ~ 53416431 (-) True G30479
TU38120 lncRNA upstream 127612 53430952 ~ 53434101 (-) True G30486
TU38148 lncRNA upstream 183501 53486841 ~ 53491107 (-) True G30505
TU38143 lncRNA upstream 196399 53499739 ~ 53506725 (-) True G30501
AMCG00008340 mRNA downstream 18905 53276379 ~ 53281571 (-) True AMCG00008340
AMCG00008332 mRNA downstream 650914 52626515 ~ 52649562 (-) True AMCG00008332
AMCG00008331 mRNA downstream 716451 52572120 ~ 52584025 (-) True AMCG00008331
AMCG00008329 mRNA downstream 795154 52493341 ~ 52505322 (-) True AMCG00008329
AMCG00008324 mRNA downstream 874805 52388795 ~ 52425671 (-) True AMCG00008324
AMCG00008341 mRNA upstream 2458 53305798 ~ 53357218 (-) True AMCG00008341
TU37623 other downstream 2772440 50523987 ~ 50528036 (-) True AMCG00008298
TU37591 other downstream 3026293 50273738 ~ 50274183 (-) True G30054
TU37508 other downstream 3246374 50053825 ~ 50054102 (-) True G29974
TU37454 other downstream 3399525 49795971 ~ 49900951 (-) True G29928
TU37036 other downstream 5017263 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile